Wall clock time and date at job start Mon Mar 30 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 H 1.09004 * 115.52248 * 325.94578 * 13 11 10 15 15 C 1.52908 * 117.45264 * 180.54558 * 13 11 10 16 16 H 1.09002 * 119.74169 * 4.63006 * 15 13 11 17 17 C 1.54744 * 118.19314 * 161.86686 * 15 13 11 18 18 C 1.54992 * 102.12860 * 84.11401 * 17 15 13 19 19 O 1.44376 * 103.49879 * 322.89015 * 18 17 15 20 20 C 1.43817 * 106.94442 * 39.94819 * 19 18 17 21 21 H 1.08999 * 117.26086 * 115.80912 * 20 19 18 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 26 26 H 1.09001 * 110.86948 * 325.95113 * 17 15 13 27 27 H 1.08999 * 111.05141 * 202.35642 * 17 15 13 28 28 H 1.08999 * 110.61519 * 204.39050 * 18 17 15 29 29 H 1.08998 * 110.74753 * 81.45854 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 1 3.6574 -5.8562 -0.5522 15 6 2.1600 -7.4463 -0.0129 16 1 1.0833 -7.5935 -0.0971 17 6 3.0903 -8.6074 -0.4384 18 6 3.8278 -8.9353 0.8848 19 8 4.0196 -7.6403 1.4936 20 6 2.8161 -6.8870 1.2645 21 1 2.2328 -6.5998 2.1392 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0002 26 1 3.7936 -8.2807 -1.2044 27 1 2.5131 -9.4649 -0.7841 28 1 4.7879 -9.4098 0.6816 29 1 3.2136 -9.5717 1.5218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306392621.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:06 Heat of formation + Delta-G solvation = -54.446138 kcal Electronic energy + Delta-G solvation = -13486.498614 eV Core-core repulsion = 10989.584449 eV Total energy + Delta-G solvation = -2496.914165 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.50591 -38.34312 -34.31808 -33.69338 -32.32121 -30.70333 -27.52818 -24.54508 -22.78039 -21.80932 -20.76912 -19.60126 -17.66455 -16.29904 -16.08527 -15.35159 -15.19613 -14.67978 -14.23988 -14.03747 -13.24572 -13.00379 -12.66228 -12.04580 -11.92770 -11.80520 -11.37669 -10.96801 -10.93358 -10.81356 -10.33767 -10.01761 -9.58483 -9.39416 -9.11140 -8.75597 -7.92123 -6.17791 -4.24675 2.76434 3.23524 3.30542 3.33885 3.61345 3.64360 4.24895 4.39317 4.57922 4.61427 4.85876 4.98639 5.04405 5.18549 5.29596 5.46415 5.51271 5.68631 5.75062 5.88365 6.16477 6.70694 7.27589 7.38964 7.48752 7.65303 7.95015 8.59087 8.75413 9.04701 9.41924 10.92497 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.069977 B = 0.005761 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.037638 B = 4859.185862 C = 5095.617020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.703 5.703 11 C 0.529 3.471 12 O -0.554 6.554 13 C -0.162 4.162 14 H 0.122 0.878 15 C -0.156 4.156 16 H 0.134 0.866 17 C -0.127 4.127 18 C 0.046 3.954 19 O -0.351 6.351 20 C 0.025 3.975 21 H 0.140 0.860 22 H 0.265 0.735 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.393 0.607 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -14.514 0.203 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.351 5.351 11 C 0.313 3.687 12 O -0.434 6.434 13 C -0.184 4.184 14 H 0.140 0.860 15 C -0.175 4.175 16 H 0.152 0.848 17 C -0.164 4.164 18 C -0.030 4.030 19 O -0.269 6.269 20 C -0.033 4.033 21 H 0.157 0.843 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.226 0.774 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.769 -14.438 0.323 15.949 hybrid contribution 0.729 1.030 -0.197 1.277 sum 7.498 -13.407 0.126 15.362 Atomic orbital electron populations 1.69985 1.06116 1.27233 1.48984 1.24959 0.94928 0.99498 0.94660 0.86345 0.79860 0.82868 0.77753 1.19590 1.20790 1.20767 1.21266 0.93372 0.90372 1.53130 0.91747 1.19165 0.88303 0.81908 0.97864 1.46404 1.11395 1.05799 1.71472 1.19271 0.88106 0.83610 0.77686 1.90659 1.16493 1.84849 1.51370 1.22918 1.01215 0.91648 1.02604 0.86025 1.23887 1.01058 0.91659 1.00853 0.84832 1.22814 0.98044 0.97290 0.98279 1.23878 1.00704 0.86209 0.92203 1.88766 1.35693 1.24966 1.77471 1.23851 0.88247 0.99324 0.91924 0.84283 0.92477 0.95372 0.95390 0.77397 0.90170 0.89460 0.88738 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.44 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 15 8 H 0.06 1.66 7.60 -52.49 -0.40 1.26 15 9 C 0.25 6.64 5.43 -5.19 -0.03 6.61 15 10 N -0.70 -15.18 5.55 -61.47 -0.34 -15.52 15 11 C 0.53 10.81 7.61 -10.99 -0.08 10.73 15 12 O -0.55 -13.36 16.34 5.56 0.09 -13.27 15 13 C -0.16 -2.51 5.91 -91.77 -0.54 -3.05 15 14 H 0.12 1.68 8.14 -51.93 -0.42 1.25 15 15 C -0.16 -2.08 6.56 -89.17 -0.59 -2.67 15 16 H 0.13 1.90 7.81 -51.93 -0.41 1.49 15 17 C -0.13 -1.24 6.95 -24.76 -0.17 -1.42 15 18 C 0.05 0.45 7.72 38.21 0.29 0.74 15 19 O -0.35 -4.77 11.49 -35.23 -0.40 -5.18 15 20 C 0.03 0.36 7.36 -26.10 -0.19 0.17 15 21 H 0.14 1.99 8.14 -51.93 -0.42 1.57 15 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.39 7.38 8.32 -40.82 -0.34 7.04 15 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 15 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 LS Contribution 256.96 15.07 3.87 3.87 Total: -1.00 -31.98 256.96 -6.45 -38.44 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.66 Total: 3.56 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -1.72 Total: -2.40 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.40 Total: -40.95 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.31 Total: -18.45 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.98 -6.45 -38.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306392621.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.010 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds