Wall clock time and date at job start Mon Mar 30 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 H 1.09004 * 115.52248 * 325.94578 * 13 11 10 15 15 C 1.52908 * 117.45264 * 180.54558 * 13 11 10 16 16 H 1.09002 * 119.74169 * 4.63006 * 15 13 11 17 17 C 1.54744 * 118.19314 * 161.86686 * 15 13 11 18 18 C 1.54992 * 102.12860 * 84.11401 * 17 15 13 19 19 O 1.44376 * 103.49879 * 322.89015 * 18 17 15 20 20 C 1.43817 * 106.94442 * 39.94819 * 19 18 17 21 21 H 1.08999 * 117.26086 * 115.80912 * 20 19 18 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 26 26 H 1.09001 * 110.86948 * 325.95113 * 17 15 13 27 27 H 1.08999 * 111.05141 * 202.35642 * 17 15 13 28 28 H 1.08999 * 110.61519 * 204.39050 * 18 17 15 29 29 H 1.08998 * 110.74753 * 81.45854 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 1 3.6574 -5.8562 -0.5522 15 6 2.1600 -7.4463 -0.0129 16 1 1.0833 -7.5935 -0.0971 17 6 3.0903 -8.6074 -0.4384 18 6 3.8278 -8.9353 0.8848 19 8 4.0196 -7.6403 1.4936 20 6 2.8161 -6.8870 1.2645 21 1 2.2328 -6.5998 2.1392 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0002 26 1 3.7936 -8.2807 -1.2044 27 1 2.5131 -9.4649 -0.7841 28 1 4.7879 -9.4098 0.6816 29 1 3.2136 -9.5717 1.5218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306392621.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:05 Heat of formation + Delta-G solvation = -78.357459 kcal Electronic energy + Delta-G solvation = -13487.535487 eV Core-core repulsion = 10989.584449 eV Total energy + Delta-G solvation = -2497.951038 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.68426 -39.92161 -36.24142 -34.89903 -34.36201 -31.60186 -29.53944 -26.06980 -24.23592 -23.13218 -21.93330 -21.18846 -19.26398 -17.99560 -17.31554 -16.90212 -16.77444 -16.13744 -15.86240 -15.40673 -14.67475 -14.28101 -14.08058 -13.82784 -13.74459 -12.97824 -12.86425 -12.76793 -12.30441 -12.24435 -11.72230 -11.49270 -11.13241 -10.95890 -10.84247 -10.50493 -9.89860 -8.31568 -6.48297 1.34210 1.42458 1.43648 1.57253 2.19078 2.36111 2.41450 3.03397 3.09159 3.48801 3.59843 3.69820 4.00867 4.18341 4.22752 4.33855 4.67550 4.85004 4.90969 4.95644 5.06972 5.16604 5.19531 5.43580 5.63134 5.76723 5.81210 6.61783 6.81194 7.19666 7.37961 8.80893 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.069977 B = 0.005761 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.037638 B = 4859.185862 C = 5095.617020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.264 3.736 10 N -0.700 5.700 11 C 0.528 3.472 12 O -0.597 6.597 13 C -0.169 4.169 14 H 0.144 0.856 15 C -0.148 4.148 16 H 0.122 0.878 17 C -0.117 4.117 18 C 0.041 3.959 19 O -0.365 6.365 20 C 0.029 3.971 21 H 0.132 0.868 22 H 0.270 0.730 23 H -0.009 1.009 24 H -0.010 1.010 25 H 0.409 0.591 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.002 -15.319 -0.029 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.142 3.858 10 N -0.349 5.349 11 C 0.315 3.685 12 O -0.479 6.479 13 C -0.191 4.191 14 H 0.162 0.838 15 C -0.167 4.167 16 H 0.139 0.861 17 C -0.155 4.155 18 C -0.034 4.034 19 O -0.284 6.284 20 C -0.030 4.030 21 H 0.149 0.851 22 H 0.078 0.922 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.245 0.755 26 H 0.108 0.892 27 H 0.131 0.869 28 H 0.140 0.860 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.215 -15.280 0.092 17.844 hybrid contribution -0.058 1.179 -0.112 1.186 sum 9.157 -14.101 -0.020 16.813 Atomic orbital electron populations 1.70137 1.08236 1.28591 1.49894 1.26070 0.95812 1.03910 0.93763 0.85091 0.79030 0.77216 0.77764 1.17745 1.20318 1.20351 1.21638 0.94317 0.90541 1.53018 0.89884 1.18623 0.88662 0.84167 0.94376 1.46162 1.11410 1.05353 1.71961 1.20100 0.88474 0.84215 0.75730 1.90630 1.18859 1.85506 1.52906 1.22739 1.00838 0.90616 1.04870 0.83785 1.24051 1.01245 0.91334 1.00061 0.86054 1.22885 0.97576 0.96366 0.98628 1.24178 1.02528 0.84740 0.91994 1.88755 1.35121 1.26525 1.77967 1.23739 0.88832 0.98908 0.91522 0.85060 0.92160 0.99089 0.99157 0.75524 0.89216 0.86944 0.86029 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.08 15 2 C 0.00 0.23 5.46 84.65 0.46 0.69 15 3 Si 0.99 42.67 29.54 68.60 2.03 44.70 15 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 15 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.28 -11.79 7.11 99.48 0.71 -11.09 15 7 C -0.56 -30.79 9.28 25.60 0.24 -30.55 15 8 H 0.08 4.18 7.60 -2.91 -0.02 4.15 15 9 C 0.26 14.78 5.43 85.63 0.46 15.25 15 10 N -0.70 -30.86 5.55 -466.78 -2.59 -33.45 15 11 C 0.53 22.04 7.61 87.66 0.67 22.70 15 12 O -0.60 -30.02 16.34 -3.03 -0.05 -30.07 15 13 C -0.17 -5.07 5.91 -11.54 -0.07 -5.14 15 14 H 0.14 3.65 8.14 -2.38 -0.02 3.63 15 15 C -0.15 -3.73 6.56 -9.86 -0.06 -3.79 15 16 H 0.12 3.39 7.81 -2.39 -0.02 3.37 15 17 C -0.12 -1.89 6.95 31.87 0.22 -1.67 15 18 C 0.04 0.65 7.72 72.66 0.56 1.21 15 19 O -0.36 -9.01 11.49 -148.98 -1.71 -10.73 15 20 C 0.03 0.79 7.36 31.00 0.23 1.02 15 21 H 0.13 3.75 8.14 -2.39 -0.02 3.73 15 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 23 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 15 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 25 H 0.41 15.21 8.32 -92.71 -0.77 14.44 15 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 27 H 0.11 1.29 8.14 -2.39 -0.02 1.27 15 28 H 0.12 1.31 8.14 -2.39 -0.02 1.29 15 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 15 Total: -1.00 -71.19 256.96 1.05 -70.13 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.38 Total: 15.79 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 2.71 Total: -0.29 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -2.30 Total: -89.53 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.76 Total: -40.79 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -71.19 1.05 -70.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306392621.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.224 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds