Wall clock time and date at job start Mon Mar 30 2020 03:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 C 1.53002 * 109.46896 * 120.00381 * 2 1 3 5 5 N 1.46500 * 109.47142 * 240.00099 * 2 1 3 6 6 N 1.40172 * 126.33978 * 0.02573 * 5 2 1 7 7 C 1.29480 * 108.13516 * 179.97438 * 6 5 2 8 8 N 1.37439 * 108.80136 * 359.97438 * 7 6 5 9 9 C 1.37417 * 125.83630 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00091 * 199.17035 * 9 8 7 11 11 C 1.38842 * 119.99971 * 19.16967 * 9 8 7 12 12 N 1.31416 * 119.99924 * 10.38242 * 11 9 8 13 13 Si 1.86793 * 120.00065 * 190.38262 * 11 9 8 14 14 H 1.48497 * 109.47339 * 89.99513 * 13 11 9 15 15 H 1.48498 * 109.47389 * 209.99948 * 13 11 9 16 16 H 1.48508 * 109.47106 * 330.00022 * 13 11 9 17 17 C 1.34822 * 108.32516 * 359.77520 * 8 7 6 18 18 O 1.21750 * 126.28948 * 180.23249 * 17 8 7 19 19 H 1.09005 * 109.47001 * 59.99865 * 1 2 3 20 20 H 1.08999 * 109.47285 * 299.99919 * 1 2 3 21 21 H 1.09000 * 109.46979 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46666 * 60.00289 * 3 2 1 23 23 H 1.08999 * 109.47221 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47244 * 300.00036 * 3 2 1 25 25 H 1.08995 * 109.47301 * 59.99781 * 4 2 1 26 26 H 1.09001 * 109.46973 * 179.97438 * 4 2 1 27 27 H 1.08999 * 109.46908 * 299.99930 * 4 2 1 28 28 H 1.07996 * 125.59949 * 179.97438 * 7 6 5 29 29 H 0.97002 * 120.00049 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0184 -0.6906 -1.1962 6 7 1.2307 -1.2699 -2.2006 7 6 2.0221 -1.7819 -3.0883 8 7 3.3226 -1.5594 -2.7034 9 6 4.4443 -1.9555 -3.3914 10 1 5.3955 -2.0168 -2.8838 11 6 4.3546 -2.2768 -4.7391 12 7 3.2542 -2.0106 -5.4063 13 14 5.7982 -3.0876 -5.6040 14 1 5.6729 -4.5635 -5.4986 15 1 5.8033 -2.6922 -7.0353 16 1 7.0661 -2.6517 -4.9655 17 6 3.3097 -0.8811 -1.5383 18 8 4.2841 -0.5112 -0.9089 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8901 23 1 3.1301 1.4424 0.0005 24 1 1.6768 1.9563 -0.8899 25 1 1.6767 -1.7490 1.2492 26 1 3.1300 -0.7218 1.2490 27 1 1.6767 -0.2075 2.1392 28 1 1.7113 -2.2990 -3.9840 29 1 3.1914 -2.2355 -6.3478 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306485901.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:54 Heat of formation + Delta-G solvation = 33.220142 kcal Electronic energy + Delta-G solvation = -14484.068581 eV Core-core repulsion = 12023.248662 eV Total energy + Delta-G solvation = -2460.819919 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01511 -36.69398 -35.66475 -33.72046 -30.97492 -28.71638 -26.99015 -26.94083 -25.38730 -21.98650 -20.86013 -18.83326 -17.90093 -15.61856 -15.37717 -15.03978 -14.26635 -14.14545 -13.66612 -13.59834 -13.13369 -12.09161 -11.98823 -11.86378 -11.64339 -11.35160 -11.24816 -11.16241 -11.04584 -10.78581 -10.63567 -10.52268 -10.20113 -9.78143 -8.72009 -8.60056 -7.30152 -6.66831 -4.33467 3.04061 3.06496 3.14528 3.27475 3.41926 3.97163 4.06708 4.96475 4.99227 5.21256 5.32134 5.40757 5.83431 5.88941 5.95921 6.10797 6.13008 6.25468 6.38944 6.44695 6.68694 6.75954 7.02099 7.13981 7.27466 7.55375 8.23751 8.54314 8.89875 9.32078 9.74440 10.40864 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.058153 B = 0.009517 C = 0.008739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.374427 B = 2941.520246 C = 3203.150238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.215 3.785 3 C -0.161 4.161 4 C -0.160 4.160 5 N -0.455 5.455 6 N -0.361 5.361 7 C 0.275 3.725 8 N -0.387 5.387 9 C -0.314 4.314 10 H 0.110 0.890 11 C 0.039 3.961 12 N -0.878 5.878 13 Si 0.945 3.055 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.266 1.266 17 C 0.604 3.396 18 O -0.599 6.599 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.227 0.773 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 0.927 4.907 6.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.131 3.869 3 C -0.219 4.219 4 C -0.218 4.218 5 N -0.276 5.276 6 N -0.190 5.190 7 C -0.021 4.021 8 N -0.098 5.098 9 C -0.442 4.442 10 H 0.128 0.872 11 C -0.167 4.167 12 N -0.515 5.515 13 Si 0.770 3.230 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.191 1.191 17 C 0.305 3.695 18 O -0.478 6.478 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.243 0.757 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.715 1.335 5.442 7.323 hybrid contribution 1.343 -0.447 -0.917 1.686 sum -3.372 0.888 4.526 5.713 Atomic orbital electron populations 1.21828 0.92844 1.02910 1.01734 1.20055 0.94452 0.90865 0.81485 1.22215 1.03279 0.94779 1.01628 1.22208 1.03220 1.00354 0.96027 1.48871 1.04540 1.53599 1.20623 1.76915 1.19424 1.22135 1.00559 1.26207 0.80944 0.96663 0.98313 1.41842 1.06897 1.42726 1.18349 1.19679 0.87942 1.44390 0.92217 0.87249 1.25417 0.99102 0.96387 0.95754 1.69695 1.27439 1.43848 1.10530 0.85620 0.80083 0.79166 0.78088 1.19753 1.20432 1.19059 1.16896 0.84006 0.83839 0.84785 1.90816 1.36650 1.60837 1.59501 0.91695 0.92072 0.91724 0.91641 0.90899 0.92484 0.92524 0.90942 0.91603 0.75708 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.00 37.16 0.30 -1.79 15 2 C 0.22 3.98 1.15 -131.82 -0.15 3.83 15 3 C -0.16 -2.77 8.51 37.16 0.32 -2.45 15 4 C -0.16 -2.69 8.52 37.16 0.32 -2.37 15 5 N -0.45 -10.59 3.47 -52.33 -0.18 -10.77 15 6 N -0.36 -8.45 11.62 29.90 0.35 -8.10 15 7 C 0.27 6.80 11.26 -88.98 -1.00 5.80 15 8 N -0.39 -10.54 2.87 -67.35 -0.19 -10.73 15 9 C -0.31 -8.59 9.93 -14.82 -0.15 -8.74 15 10 H 0.11 3.03 7.85 -52.49 -0.41 2.61 15 11 C 0.04 0.97 5.37 -17.51 -0.09 0.87 15 12 N -0.88 -22.19 10.82 55.49 0.60 -21.59 15 13 Si 0.95 19.46 29.56 -169.99 -5.03 14.44 15 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 15 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 17 C 0.60 16.30 7.93 -86.74 -0.69 15.62 15 18 O -0.60 -17.18 15.66 5.14 0.08 -17.10 15 19 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 23 H 0.07 1.44 7.05 -51.93 -0.37 1.08 15 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.07 1.40 7.08 -51.93 -0.37 1.03 15 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.23 5.36 6.33 -52.49 -0.33 5.03 15 29 H 0.28 6.53 8.31 -40.82 -0.34 6.19 15 LS Contribution 249.61 15.07 3.76 3.76 Total: -1.00 -29.92 249.61 -5.33 -35.26 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.57 Total: 4.07 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.15 Total: 10.77 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.57 Total: -51.20 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.08 Total: -17.10 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.92 -5.33 -35.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306485901.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.478 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds