Wall clock time and date at job start Mon Mar 30 2020 03:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 C 1.53002 * 109.46896 * 120.00381 * 2 1 3 5 5 N 1.46500 * 109.47142 * 240.00099 * 2 1 3 6 6 N 1.40172 * 126.33978 * 0.02573 * 5 2 1 7 7 C 1.29480 * 108.13516 * 179.97438 * 6 5 2 8 8 N 1.37439 * 108.80136 * 359.97438 * 7 6 5 9 9 C 1.37417 * 125.83630 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00091 * 199.17035 * 9 8 7 11 11 C 1.38842 * 119.99971 * 19.16967 * 9 8 7 12 12 N 1.31416 * 119.99924 * 10.38242 * 11 9 8 13 13 Si 1.86793 * 120.00065 * 190.38262 * 11 9 8 14 14 H 1.48497 * 109.47339 * 89.99513 * 13 11 9 15 15 H 1.48498 * 109.47389 * 209.99948 * 13 11 9 16 16 H 1.48508 * 109.47106 * 330.00022 * 13 11 9 17 17 C 1.34822 * 108.32516 * 359.77520 * 8 7 6 18 18 O 1.21750 * 126.28948 * 180.23249 * 17 8 7 19 19 H 1.09005 * 109.47001 * 59.99865 * 1 2 3 20 20 H 1.08999 * 109.47285 * 299.99919 * 1 2 3 21 21 H 1.09000 * 109.46979 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46666 * 60.00289 * 3 2 1 23 23 H 1.08999 * 109.47221 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47244 * 300.00036 * 3 2 1 25 25 H 1.08995 * 109.47301 * 59.99781 * 4 2 1 26 26 H 1.09001 * 109.46973 * 179.97438 * 4 2 1 27 27 H 1.08999 * 109.46908 * 299.99930 * 4 2 1 28 28 H 1.07996 * 125.59949 * 179.97438 * 7 6 5 29 29 H 0.97002 * 120.00049 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0184 -0.6906 -1.1962 6 7 1.2307 -1.2699 -2.2006 7 6 2.0221 -1.7819 -3.0883 8 7 3.3226 -1.5594 -2.7034 9 6 4.4443 -1.9555 -3.3914 10 1 5.3955 -2.0168 -2.8838 11 6 4.3546 -2.2768 -4.7391 12 7 3.2542 -2.0106 -5.4063 13 14 5.7982 -3.0876 -5.6040 14 1 5.6729 -4.5635 -5.4986 15 1 5.8033 -2.6922 -7.0353 16 1 7.0661 -2.6517 -4.9655 17 6 3.3097 -0.8811 -1.5383 18 8 4.2841 -0.5112 -0.9089 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8901 23 1 3.1301 1.4424 0.0005 24 1 1.6768 1.9563 -0.8899 25 1 1.6767 -1.7490 1.2492 26 1 3.1300 -0.7218 1.2490 27 1 1.6767 -0.2075 2.1392 28 1 1.7113 -2.2990 -3.9840 29 1 3.1914 -2.2355 -6.3478 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306485901.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:53 Heat of formation + Delta-G solvation = 15.490364 kcal Electronic energy + Delta-G solvation = -14484.837402 eV Core-core repulsion = 12023.248662 eV Total energy + Delta-G solvation = -2461.588740 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.96413 -38.31806 -37.69195 -35.60284 -32.92800 -30.59224 -28.32659 -28.30672 -27.35687 -23.82979 -22.77343 -20.67131 -19.75181 -17.51791 -17.19561 -16.91812 -16.07119 -15.99324 -15.45765 -15.13991 -14.66699 -13.76584 -13.43784 -13.37450 -13.10413 -13.03538 -13.00308 -12.86815 -12.66540 -12.37760 -12.21271 -12.08056 -12.00874 -11.56977 -10.73034 -10.51255 -9.24568 -8.61135 -6.39733 1.32113 1.37037 1.48426 1.48864 1.61964 2.06736 2.25417 2.98314 3.12977 3.68708 3.92044 4.03522 4.32657 4.59240 4.64693 4.77468 4.81395 4.85809 4.91277 5.00154 5.08502 5.13690 5.30024 5.31035 5.49028 5.76623 6.23121 6.55701 6.89406 7.34505 7.71361 8.47413 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.058153 B = 0.009517 C = 0.008739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.374427 B = 2941.520246 C = 3203.150238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.191 3.809 3 C -0.154 4.154 4 C -0.152 4.152 5 N -0.445 5.445 6 N -0.345 5.345 7 C 0.264 3.736 8 N -0.399 5.399 9 C -0.361 4.361 10 H 0.092 0.908 11 C 0.012 3.988 12 N -0.891 5.891 13 Si 1.016 2.984 14 H -0.258 1.258 15 H -0.266 1.266 16 H -0.271 1.271 17 C 0.579 3.421 18 O -0.631 6.631 19 H 0.055 0.945 20 H 0.106 0.894 21 H 0.058 0.942 22 H 0.112 0.888 23 H 0.038 0.962 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.112 0.888 28 H 0.233 0.767 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 0.907 4.973 7.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.109 3.891 3 C -0.212 4.212 4 C -0.210 4.210 5 N -0.266 5.266 6 N -0.174 5.174 7 C -0.032 4.032 8 N -0.110 5.110 9 C -0.488 4.488 10 H 0.110 0.890 11 C -0.192 4.192 12 N -0.526 5.526 13 Si 0.837 3.163 14 H -0.183 1.183 15 H -0.190 1.190 16 H -0.196 1.196 17 C 0.279 3.721 18 O -0.513 6.513 19 H 0.074 0.926 20 H 0.124 0.876 21 H 0.077 0.923 22 H 0.131 0.869 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.130 0.870 28 H 0.249 0.751 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.793 1.325 5.518 8.110 hybrid contribution 1.576 -0.400 -0.927 1.872 sum -4.216 0.925 4.591 6.302 Atomic orbital electron populations 1.21810 0.89886 1.03126 1.03509 1.20786 0.96799 0.91256 0.80225 1.22183 1.01077 0.94384 1.03555 1.22169 1.01067 1.00711 0.97080 1.49383 1.03238 1.52692 1.21281 1.76867 1.19044 1.21236 1.00278 1.26340 0.80334 0.97557 0.98968 1.42085 1.07635 1.42672 1.18582 1.19801 0.87872 1.47599 0.93527 0.88996 1.26328 1.01980 0.95550 0.95349 1.69727 1.28712 1.42875 1.11322 0.84607 0.76125 0.78582 0.77015 1.18300 1.19014 1.19599 1.17251 0.85017 0.84638 0.85185 1.90759 1.37845 1.62281 1.60398 0.92611 0.87580 0.92265 0.86905 0.94239 0.93294 0.92865 0.94212 0.86955 0.75086 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.00 71.98 0.58 -2.91 15 2 C 0.19 6.79 1.15 3.61 0.00 6.79 15 3 C -0.15 -5.09 8.51 71.98 0.61 -4.48 15 4 C -0.15 -4.88 8.52 71.98 0.61 -4.27 15 5 N -0.44 -20.82 3.47 -437.56 -1.52 -22.34 15 6 N -0.35 -16.15 11.62 -59.33 -0.69 -16.84 15 7 C 0.26 13.23 11.26 179.77 2.02 15.25 15 8 N -0.40 -22.35 2.87 -485.15 -1.39 -23.74 15 9 C -0.36 -20.29 9.93 83.96 0.83 -19.46 15 10 H 0.09 5.34 7.85 -2.91 -0.02 5.31 15 11 C 0.01 0.61 5.37 84.90 0.46 1.06 15 12 N -0.89 -44.50 10.82 21.64 0.23 -44.27 15 13 Si 1.02 39.27 29.56 68.60 2.03 41.29 15 14 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 15 H -0.27 -9.67 7.11 99.48 0.71 -8.96 15 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 17 C 0.58 32.25 7.93 178.99 1.42 33.67 15 18 O -0.63 -37.80 15.66 -4.51 -0.07 -37.88 15 19 H 0.05 1.65 8.14 -2.38 -0.02 1.63 15 20 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.11 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.04 1.56 7.05 -2.39 -0.02 1.55 15 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 25 H 0.05 1.71 8.14 -2.39 -0.02 1.70 15 26 H 0.04 1.53 7.08 -2.39 -0.02 1.52 15 27 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 28 H 0.23 11.10 6.33 -2.91 -0.02 11.08 15 29 H 0.29 13.15 8.31 -92.71 -0.77 12.38 15 Total: -1.00 -66.43 249.61 6.27 -60.16 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.14 Total: 17.95 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 6.54 Total: 25.66 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -3.37 Total: -107.19 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.07 Total: -37.88 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.29 kcal Total: -66.43 6.27 -60.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306485901.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.654 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds