Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46988 * 2 1 4 4 O 1.42894 * 109.47771 * 119.99951 * 2 1 3 5 5 C 1.53002 * 109.47264 * 240.00450 * 2 1 3 6 6 N 1.46496 * 109.47367 * 174.99501 * 5 2 1 7 7 N 1.39847 * 125.69951 * 90.02118 * 6 5 2 8 8 C 1.30259 * 109.54043 * 179.97438 * 7 6 5 9 9 C 1.41806 * 108.25830 * 0.02562 * 8 7 6 10 10 C 1.41183 * 126.63616 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99701 * 186.87312 * 10 9 8 12 12 C 1.39552 * 120.00540 * 6.86641 * 10 9 8 13 13 N 1.31199 * 119.99659 * 10.66268 * 12 10 9 14 14 Si 1.86793 * 120.00371 * 190.66603 * 12 10 9 15 15 H 1.48502 * 109.47468 * 94.00833 * 14 12 10 16 16 H 1.48498 * 109.47296 * 214.00561 * 14 12 10 17 17 H 1.48494 * 109.47181 * 334.00811 * 14 12 10 18 18 C 1.35150 * 125.70251 * 269.71857 * 6 5 2 19 19 N 1.37728 * 126.56115 * 359.97415 * 18 6 5 20 20 H 1.09004 * 109.46808 * 299.99413 * 1 2 3 21 21 H 1.08991 * 109.47937 * 59.99918 * 1 2 3 22 22 H 1.09001 * 109.46988 * 180.02562 * 1 2 3 23 23 H 0.96708 * 113.99739 * 60.00091 * 4 2 1 24 24 H 1.08998 * 109.47049 * 294.99880 * 5 2 1 25 25 H 1.08999 * 109.46943 * 54.99545 * 5 2 1 26 26 H 1.08005 * 125.87410 * 179.97438 * 8 7 6 27 27 H 0.97003 * 119.99922 * 179.97438 * 13 12 10 28 28 H 0.96998 * 120.00208 * 0.02562 * 19 18 6 29 29 H 0.97008 * 120.00132 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5000 -0.6177 -1.3111 7 7 4.4067 -1.5236 -0.7517 8 6 5.6238 -1.1279 -0.9944 9 6 5.5590 0.0781 -1.7375 10 6 6.6522 0.8394 -2.2050 11 1 6.4826 1.8012 -2.6662 12 6 7.9520 0.3493 -2.0711 13 7 8.1493 -0.8957 -1.7073 14 14 9.4107 1.4658 -2.4098 15 1 9.8687 2.0814 -1.1384 16 1 10.5164 0.6701 -3.0008 17 1 9.0068 2.5336 -3.3594 18 6 4.1958 0.3661 -1.9232 19 7 3.6697 1.4455 -2.5977 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.7211 -1.5952 1.2328 24 1 1.7517 -1.7714 -1.2057 25 1 1.6053 -0.2616 -2.1370 26 1 6.5270 -1.6314 -0.6827 27 1 9.0528 -1.2365 -1.6146 28 1 2.7081 1.5528 -2.6664 29 1 4.2609 2.0985 -3.0041 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306534647.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = 20.381226 kcal Electronic energy + Delta-G solvation = -14024.771405 eV Core-core repulsion = 11563.394748 eV Total energy + Delta-G solvation = -2461.376656 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.34235 -37.22264 -33.43933 -33.18578 -31.95627 -29.86105 -27.66720 -25.75271 -23.85837 -21.62126 -19.74581 -18.93532 -17.10495 -16.31776 -15.61383 -15.40364 -15.08706 -14.45507 -14.24134 -13.32465 -12.84000 -12.63309 -12.27636 -12.04556 -11.69011 -11.19936 -11.04294 -10.85357 -10.72855 -10.39552 -10.05392 -9.80797 -9.59337 -8.95108 -8.61139 -7.28768 -6.44809 -6.18715 -3.58657 3.20182 3.32348 3.34633 3.62157 3.78301 4.32304 4.58701 4.58814 4.87420 5.09456 5.18851 5.25026 5.40128 5.66941 5.74274 5.79944 5.99430 6.19349 6.89102 7.13156 7.40409 7.80377 7.91395 7.98276 8.30113 8.74023 8.82393 8.95725 9.32209 9.41811 9.74219 10.83947 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.056832 B = 0.008171 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.564380 B = 3425.864056 C = 3676.325300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.096 0.904 4 O -0.547 6.547 5 C 0.120 3.880 6 N -0.402 5.402 7 N -0.350 5.350 8 C 0.057 3.943 9 C -0.079 4.079 10 C -0.429 4.429 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.852 5.852 14 Si 0.906 3.094 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.203 3.797 19 N -0.862 5.862 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.370 0.630 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.193 0.807 27 H 0.267 0.733 28 H 0.374 0.626 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 1.966 0.217 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.025 3.975 3 H 0.114 0.886 4 O -0.351 6.351 5 C -0.005 4.005 6 N -0.194 5.194 7 N -0.174 5.174 8 C -0.127 4.127 9 C -0.093 4.093 10 C -0.465 4.465 11 H 0.078 0.922 12 C -0.146 4.146 13 N -0.486 5.486 14 Si 0.733 3.267 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.017 4.017 19 N -0.413 5.413 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.217 0.783 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.209 0.791 27 H 0.078 0.922 28 H 0.200 0.800 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.500 1.420 0.955 11.627 hybrid contribution 0.698 1.017 -0.978 1.574 sum -10.802 2.437 -0.023 11.074 Atomic orbital electron populations 1.22476 0.96456 1.02462 1.02663 1.22391 0.91946 0.97416 0.85777 0.88612 1.86665 1.77374 1.28401 1.42649 1.21830 0.79354 1.01546 0.97775 1.47326 1.03196 1.20422 1.48421 1.76663 0.99905 1.15484 1.25307 1.24465 0.93983 0.96724 0.97565 1.17413 0.88057 0.98095 1.05728 1.18316 0.89702 1.02828 1.35668 0.92246 1.25429 0.99415 0.94798 0.94968 1.69669 1.21931 1.13797 1.43232 0.86352 0.81276 0.80487 0.78575 1.20394 1.21058 1.19635 1.18133 0.90899 0.89380 1.03252 1.40565 1.07170 1.27773 1.65750 0.91719 0.91675 0.92246 0.78334 0.90169 0.90746 0.79051 0.92197 0.80025 0.76589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.53 37.15 0.35 -1.51 15 2 C 0.09 1.26 3.83 -26.73 -0.10 1.16 15 3 H 0.10 1.58 8.14 -51.93 -0.42 1.16 15 4 O -0.55 -9.27 13.29 -35.23 -0.47 -9.74 15 5 C 0.12 1.95 5.86 -4.04 -0.02 1.92 15 6 N -0.40 -9.07 3.55 -59.68 -0.21 -9.28 15 7 N -0.35 -9.04 12.44 30.94 0.39 -8.65 15 8 C 0.06 1.61 10.86 -16.86 -0.18 1.42 15 9 C -0.08 -2.20 5.92 -106.54 -0.63 -2.83 15 10 C -0.43 -12.00 9.22 -37.97 -0.35 -12.35 15 11 H 0.06 1.58 7.41 -52.49 -0.39 1.19 15 12 C 0.06 1.67 5.45 -17.33 -0.09 1.58 15 13 N -0.85 -23.74 10.56 55.53 0.59 -23.16 15 14 Si 0.91 20.56 29.57 -169.99 -5.03 15.54 15 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 18 C 0.20 4.86 8.06 -153.30 -1.23 3.63 15 19 N -0.86 -16.29 9.03 31.65 0.29 -16.00 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.37 4.93 9.05 45.56 0.41 5.34 15 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.07 1.03 7.46 -51.93 -0.39 0.65 15 26 H 0.19 5.51 6.02 -52.48 -0.32 5.20 15 27 H 0.27 6.93 8.30 -40.82 -0.34 6.60 15 28 H 0.37 5.70 8.05 -40.82 -0.33 5.37 15 29 H 0.40 7.40 8.34 -40.82 -0.34 7.06 15 LS Contribution 253.82 15.07 3.83 3.83 Total: -1.00 -32.66 253.82 -5.49 -38.15 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -2.60 Total: 16.30 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.27 Total: -6.98 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 1.05 Total: -57.09 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.47 Total: -9.74 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.66 -5.49 -38.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306534647.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.533 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds