Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46988 * 2 1 4 4 O 1.42894 * 109.47771 * 119.99951 * 2 1 3 5 5 C 1.53002 * 109.47264 * 240.00450 * 2 1 3 6 6 N 1.46496 * 109.47367 * 174.99501 * 5 2 1 7 7 N 1.39847 * 125.69951 * 90.02118 * 6 5 2 8 8 C 1.30259 * 109.54043 * 179.97438 * 7 6 5 9 9 C 1.41806 * 108.25830 * 0.02562 * 8 7 6 10 10 C 1.41183 * 126.63616 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99701 * 186.87312 * 10 9 8 12 12 C 1.39552 * 120.00540 * 6.86641 * 10 9 8 13 13 N 1.31199 * 119.99659 * 10.66268 * 12 10 9 14 14 Si 1.86793 * 120.00371 * 190.66603 * 12 10 9 15 15 H 1.48502 * 109.47468 * 94.00833 * 14 12 10 16 16 H 1.48498 * 109.47296 * 214.00561 * 14 12 10 17 17 H 1.48494 * 109.47181 * 334.00811 * 14 12 10 18 18 C 1.35150 * 125.70251 * 269.71857 * 6 5 2 19 19 N 1.37728 * 126.56115 * 359.97415 * 18 6 5 20 20 H 1.09004 * 109.46808 * 299.99413 * 1 2 3 21 21 H 1.08991 * 109.47937 * 59.99918 * 1 2 3 22 22 H 1.09001 * 109.46988 * 180.02562 * 1 2 3 23 23 H 0.96708 * 113.99739 * 60.00091 * 4 2 1 24 24 H 1.08998 * 109.47049 * 294.99880 * 5 2 1 25 25 H 1.08999 * 109.46943 * 54.99545 * 5 2 1 26 26 H 1.08005 * 125.87410 * 179.97438 * 8 7 6 27 27 H 0.97003 * 119.99922 * 179.97438 * 13 12 10 28 28 H 0.96998 * 120.00208 * 0.02562 * 19 18 6 29 29 H 0.97008 * 120.00132 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5000 -0.6177 -1.3111 7 7 4.4067 -1.5236 -0.7517 8 6 5.6238 -1.1279 -0.9944 9 6 5.5590 0.0781 -1.7375 10 6 6.6522 0.8394 -2.2050 11 1 6.4826 1.8012 -2.6662 12 6 7.9520 0.3493 -2.0711 13 7 8.1493 -0.8957 -1.7073 14 14 9.4107 1.4658 -2.4098 15 1 9.8687 2.0814 -1.1384 16 1 10.5164 0.6701 -3.0008 17 1 9.0068 2.5336 -3.3594 18 6 4.1958 0.3661 -1.9232 19 7 3.6697 1.4455 -2.5977 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.7211 -1.5952 1.2328 24 1 1.7517 -1.7714 -1.2057 25 1 1.6053 -0.2616 -2.1370 26 1 6.5270 -1.6314 -0.6827 27 1 9.0528 -1.2365 -1.6146 28 1 2.7081 1.5528 -2.6664 29 1 4.2609 2.0985 -3.0041 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306534647.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = -5.547402 kcal Electronic energy + Delta-G solvation = -14025.895754 eV Core-core repulsion = 11563.394748 eV Total energy + Delta-G solvation = -2462.501006 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18302 -38.51993 -35.30447 -34.99807 -33.46358 -31.26266 -29.58333 -27.29198 -25.70149 -22.85764 -21.69982 -20.71288 -18.95554 -17.92020 -17.08852 -16.95981 -16.63027 -16.13426 -15.69396 -15.00157 -14.47985 -14.30007 -13.56422 -13.36981 -12.95258 -12.90162 -12.71832 -12.59454 -12.39193 -11.91888 -11.76032 -11.39716 -11.20850 -10.89064 -10.60341 -9.14387 -8.36818 -8.15781 -5.62810 1.41384 1.47699 1.59257 1.74564 2.10121 2.43693 2.54259 3.43673 3.46220 3.69670 3.82038 4.02699 4.16376 4.34939 4.57861 4.84497 4.90608 5.08680 5.26062 5.28577 5.39636 5.85314 6.15382 6.29880 6.73510 6.85602 7.09341 7.10198 7.34838 7.49379 7.80821 8.87180 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.056832 B = 0.008171 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.564380 B = 3425.864056 C = 3676.325300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 H 0.076 0.924 4 O -0.577 6.577 5 C 0.105 3.895 6 N -0.392 5.392 7 N -0.365 5.365 8 C 0.024 3.976 9 C -0.136 4.136 10 C -0.455 4.455 11 H 0.065 0.935 12 C 0.009 3.991 13 N -0.886 5.886 14 Si 0.978 3.022 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.261 1.261 18 C 0.229 3.771 19 N -0.841 5.841 20 H 0.067 0.933 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.384 0.616 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.172 0.828 27 H 0.269 0.731 28 H 0.397 0.603 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.281 3.194 -0.560 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.029 3.971 3 H 0.094 0.906 4 O -0.384 6.384 5 C -0.017 4.017 6 N -0.184 5.184 7 N -0.191 5.191 8 C -0.158 4.158 9 C -0.151 4.151 10 C -0.491 4.491 11 H 0.083 0.917 12 C -0.195 4.195 13 N -0.521 5.521 14 Si 0.802 3.198 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.185 1.185 18 C 0.005 3.995 19 N -0.394 5.394 20 H 0.086 0.914 21 H 0.106 0.894 22 H 0.095 0.905 23 H 0.233 0.767 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.188 0.812 27 H 0.079 0.921 28 H 0.227 0.773 29 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.613 2.648 0.175 13.869 hybrid contribution 1.085 0.640 -0.742 1.462 sum -12.528 3.288 -0.567 12.965 Atomic orbital electron populations 1.22349 0.92298 1.04047 1.03951 1.22370 0.94956 0.95713 0.84057 0.90603 1.86622 1.78326 1.29744 1.43709 1.22435 0.75557 1.03437 1.00256 1.47768 1.05309 1.18924 1.46354 1.76545 0.99672 1.16551 1.26297 1.24203 0.94297 0.97800 0.99507 1.17794 0.90064 0.99177 1.08039 1.18608 0.90680 1.03226 1.36605 0.91726 1.26285 1.02054 0.96154 0.94972 1.69810 1.22423 1.15381 1.44470 0.85238 0.77569 0.78542 0.78409 1.20284 1.20689 1.18537 1.18308 0.90423 0.89734 1.01069 1.40508 1.08721 1.26026 1.64100 0.91393 0.89434 0.90546 0.76733 0.88669 0.87416 0.81158 0.92128 0.77335 0.75904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.53 71.98 0.69 -2.06 15 2 C 0.09 2.38 3.83 30.59 0.12 2.50 15 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 4 O -0.58 -18.75 13.29 -148.98 -1.98 -20.72 15 5 C 0.11 3.09 5.86 86.38 0.51 3.60 15 6 N -0.39 -17.19 3.55 -342.74 -1.22 -18.40 15 7 N -0.36 -19.10 12.44 -56.02 -0.70 -19.80 15 8 C 0.02 1.41 10.86 85.81 0.93 2.35 15 9 C -0.14 -7.74 5.92 -21.11 -0.12 -7.87 15 10 C -0.46 -25.88 9.22 23.31 0.21 -25.67 15 11 H 0.06 3.44 7.41 -2.91 -0.02 3.42 15 12 C 0.01 0.51 5.45 85.10 0.46 0.97 15 13 N -0.89 -51.31 10.56 21.77 0.23 -51.08 15 14 Si 0.98 42.87 29.57 68.60 2.03 44.89 15 15 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 16 H -0.28 -12.02 7.11 99.48 0.71 -11.32 15 17 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 18 C 0.23 10.75 8.06 133.00 1.07 11.82 15 19 N -0.84 -29.56 9.03 -53.77 -0.49 -30.04 15 20 H 0.07 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.09 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.08 1.02 8.14 -2.39 -0.02 1.00 15 23 H 0.38 9.62 9.05 -74.05 -0.67 8.95 15 24 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15 25 H 0.11 2.48 7.46 -2.39 -0.02 2.46 15 26 H 0.17 10.47 6.02 -2.91 -0.02 10.45 15 27 H 0.27 14.49 8.30 -92.71 -0.77 13.72 15 28 H 0.40 10.51 8.05 -92.71 -0.75 9.76 15 29 H 0.41 14.02 8.34 -92.70 -0.77 13.25 15 Total: -1.00 -72.98 253.82 0.76 -72.23 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.99 Total: 37.28 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 3.87 Total: -14.36 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -2.17 Total: -119.32 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -1.98 Total: -20.72 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.98 0.76 -72.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306534647.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.681 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds