Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37098 * 119.99581 * 2 1 4 4 H 1.08006 * 119.99559 * 202.36480 * 3 2 1 5 5 C 1.38943 * 120.00384 * 22.36801 * 3 2 1 6 6 N 1.31416 * 119.99825 * 15.67633 * 5 3 2 7 7 Si 1.86799 * 120.00226 * 195.67647 * 5 3 2 8 8 H 1.48497 * 109.47137 * 94.96881 * 7 5 3 9 9 H 1.48495 * 109.47099 * 214.97390 * 7 5 3 10 10 H 1.48503 * 109.46775 * 334.97365 * 7 5 3 11 11 C 1.34778 * 119.99893 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99620 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00097 * 0.02562 * 11 2 1 14 14 H 1.09004 * 115.50741 * 62.22757 * 13 11 2 15 15 C 1.52904 * 117.45120 * 276.79793 * 13 11 2 16 16 H 1.09001 * 119.74751 * 140.11449 * 15 13 11 17 17 C 1.54756 * 118.18988 * 342.88858 * 15 13 11 18 18 C 1.54992 * 102.12473 * 275.88119 * 17 15 13 19 19 O 1.44379 * 103.49672 * 37.10912 * 18 17 15 20 20 C 1.43809 * 106.94829 * 320.04985 * 19 18 17 21 21 H 1.09001 * 117.83449 * 245.50160 * 20 19 18 22 22 H 1.08998 * 109.47129 * 273.64152 * 1 2 3 23 23 H 1.09000 * 109.47565 * 33.64269 * 1 2 3 24 24 H 1.09004 * 109.47059 * 153.64572 * 1 2 3 25 25 H 0.96997 * 119.99778 * 180.02562 * 6 5 3 26 26 H 1.09007 * 110.86941 * 34.03841 * 17 15 13 27 27 H 1.08993 * 110.87191 * 157.72319 * 17 15 13 28 28 H 1.08997 * 110.61933 * 278.60790 * 18 17 15 29 29 H 1.08994 * 110.75111 * 155.67254 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1696 1.2225 -0.3559 5 6 1.5341 2.3454 0.4579 6 7 0.4308 2.2660 1.1673 7 14 2.2738 4.0151 0.0651 8 1 1.6233 4.5716 -1.1482 9 1 2.0553 4.9350 1.2101 10 1 3.7310 3.8658 -0.1789 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.7541 -2.6498 -0.8701 15 6 0.8934 -3.0021 1.3478 16 1 -0.0903 -3.4662 1.4198 17 6 1.5198 -2.4171 2.6363 18 6 2.8050 -3.2698 2.7896 19 8 3.2495 -3.4569 1.4288 20 6 2.0746 -3.6850 0.6315 21 1 1.9582 -4.6632 0.1650 22 1 -0.3633 0.0653 1.0256 23 1 -0.3634 0.8555 -0.5693 24 1 -0.3633 -0.9209 -0.4562 25 1 0.0003 3.0744 1.4867 26 1 1.7662 -1.3635 2.5046 27 1 0.8562 -2.5582 3.4894 28 1 2.5761 -4.2290 3.2539 29 1 3.5570 -2.7341 3.3688 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306649607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -28.059044 kcal Electronic energy + Delta-G solvation = -14555.016851 eV Core-core repulsion = 12059.246916 eV Total energy + Delta-G solvation = -2495.769935 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.12248 -37.55821 -34.49049 -33.37436 -31.40884 -30.08794 -26.36885 -24.94760 -23.24906 -21.91099 -20.57158 -18.23123 -16.78685 -16.68088 -15.63728 -15.12417 -14.50414 -14.23460 -13.94814 -13.56626 -12.80667 -12.59820 -12.06631 -11.53745 -11.44450 -11.28876 -11.20349 -10.85984 -10.75615 -10.38460 -10.28063 -10.14970 -9.60275 -9.00961 -8.89400 -8.19623 -7.57313 -6.25614 -3.79826 3.19020 3.28514 3.34851 3.56448 4.00074 4.18871 4.45757 4.79803 4.97459 5.14069 5.20251 5.35613 5.48545 5.55657 5.70555 5.95099 6.00236 6.14398 6.15887 6.36834 6.42533 6.63425 6.91747 7.26962 7.33091 7.63277 8.21845 8.58308 9.28516 9.51864 10.12138 10.78416 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.047969 B = 0.009908 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.569850 B = 2825.305964 C = 2906.518985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.448 5.448 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.923 3.077 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.269 1.269 11 C 0.476 3.524 12 O -0.567 6.567 13 C -0.150 4.150 14 H 0.122 0.878 15 C -0.170 4.170 16 H 0.120 0.880 17 C -0.128 4.128 18 C 0.050 3.950 19 O -0.328 6.328 20 C 0.025 3.975 21 H 0.131 0.869 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.026 0.974 25 H 0.265 0.735 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 -8.169 1.578 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.167 5.167 3 C -0.432 4.432 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.521 5.521 7 Si 0.750 3.250 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.263 3.737 12 O -0.450 6.450 13 C -0.172 4.172 14 H 0.140 0.860 15 C -0.189 4.189 16 H 0.137 0.863 17 C -0.165 4.165 18 C -0.026 4.026 19 O -0.246 6.246 20 C -0.034 4.034 21 H 0.148 0.852 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.009 -8.003 1.608 8.700 hybrid contribution -0.321 0.941 -0.057 0.996 sum -3.330 -7.062 1.551 7.960 Atomic orbital electron populations 1.21405 0.81393 0.98131 1.01775 1.43550 1.05326 1.04545 1.63312 1.19656 0.99549 0.83765 1.40279 0.88481 1.25289 0.96737 0.99901 0.95376 1.70019 1.19782 1.29084 1.33260 0.85958 0.79619 0.81578 0.77863 1.20521 1.21049 1.19361 1.19050 0.87498 0.83520 0.83658 1.90557 1.13509 1.86606 1.54278 1.22917 1.01810 0.95833 0.96596 0.86001 1.23886 0.98747 1.04265 0.91996 0.86256 1.22770 0.96217 1.01947 0.95614 1.23758 0.95976 0.97711 0.85160 1.88881 1.26405 1.92366 1.16952 1.23733 0.84441 0.95388 0.99800 0.85232 0.92316 0.92155 0.95540 0.92455 0.89173 0.90382 0.92838 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.66 8.59 59.85 0.51 3.17 15 2 N -0.45 -11.76 3.01 -122.19 -0.37 -12.13 15 3 C -0.30 -8.71 9.27 -14.94 -0.14 -8.85 15 4 H 0.10 2.93 7.43 -52.48 -0.39 2.54 15 5 C 0.03 0.80 5.03 -17.47 -0.09 0.71 15 6 N -0.88 -23.80 10.84 55.50 0.60 -23.20 15 7 Si 0.92 21.15 29.58 -169.99 -5.03 16.12 15 8 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 11 C 0.48 12.10 5.77 -10.99 -0.06 12.04 15 12 O -0.57 -16.71 15.50 -11.46 -0.18 -16.89 15 13 C -0.15 -2.90 4.45 -91.77 -0.41 -3.31 15 14 H 0.12 2.01 7.70 -51.93 -0.40 1.61 15 15 C -0.17 -2.79 7.08 -89.17 -0.63 -3.42 15 16 H 0.12 1.55 8.14 -51.93 -0.42 1.13 15 17 C -0.13 -2.22 6.61 -24.75 -0.16 -2.39 15 18 C 0.05 0.84 7.72 38.21 0.29 1.14 15 19 O -0.33 -6.75 10.14 -52.24 -0.53 -7.28 15 20 C 0.03 0.44 7.49 -26.11 -0.20 0.25 15 21 H 0.13 1.80 8.14 -51.93 -0.42 1.37 15 22 H 0.06 1.39 7.44 -51.93 -0.39 1.00 15 23 H 0.06 1.43 7.27 -51.93 -0.38 1.05 15 24 H 0.03 0.50 6.46 -51.93 -0.34 0.16 15 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 26 H 0.09 1.98 7.13 -51.92 -0.37 1.61 15 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 244.86 15.07 3.69 3.69 Total: -1.00 -32.88 244.86 -6.20 -39.08 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -3.51 Total: 1.25 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -0.88 Total: -0.66 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.23 Total: -35.32 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.71 Total: -24.17 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.88 -6.20 -39.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306649607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.021 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds