Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37098 * 119.99581 * 2 1 4 4 H 1.08006 * 119.99559 * 202.36480 * 3 2 1 5 5 C 1.38943 * 120.00384 * 22.36801 * 3 2 1 6 6 N 1.31416 * 119.99825 * 15.67633 * 5 3 2 7 7 Si 1.86799 * 120.00226 * 195.67647 * 5 3 2 8 8 H 1.48497 * 109.47137 * 94.96881 * 7 5 3 9 9 H 1.48495 * 109.47099 * 214.97390 * 7 5 3 10 10 H 1.48503 * 109.46775 * 334.97365 * 7 5 3 11 11 C 1.34778 * 119.99893 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99620 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00097 * 0.02562 * 11 2 1 14 14 H 1.09004 * 115.50741 * 62.22757 * 13 11 2 15 15 C 1.52904 * 117.45120 * 276.79793 * 13 11 2 16 16 H 1.09001 * 119.74751 * 140.11449 * 15 13 11 17 17 C 1.54756 * 118.18988 * 342.88858 * 15 13 11 18 18 C 1.54992 * 102.12473 * 275.88119 * 17 15 13 19 19 O 1.44379 * 103.49672 * 37.10912 * 18 17 15 20 20 C 1.43809 * 106.94829 * 320.04985 * 19 18 17 21 21 H 1.09001 * 117.83449 * 245.50160 * 20 19 18 22 22 H 1.08998 * 109.47129 * 273.64152 * 1 2 3 23 23 H 1.09000 * 109.47565 * 33.64269 * 1 2 3 24 24 H 1.09004 * 109.47059 * 153.64572 * 1 2 3 25 25 H 0.96997 * 119.99778 * 180.02562 * 6 5 3 26 26 H 1.09007 * 110.86941 * 34.03841 * 17 15 13 27 27 H 1.08993 * 110.87191 * 157.72319 * 17 15 13 28 28 H 1.08997 * 110.61933 * 278.60790 * 18 17 15 29 29 H 1.08994 * 110.75111 * 155.67254 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1696 1.2225 -0.3559 5 6 1.5341 2.3454 0.4579 6 7 0.4308 2.2660 1.1673 7 14 2.2738 4.0151 0.0651 8 1 1.6233 4.5716 -1.1482 9 1 2.0553 4.9350 1.2101 10 1 3.7310 3.8658 -0.1789 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.7541 -2.6498 -0.8701 15 6 0.8934 -3.0021 1.3478 16 1 -0.0903 -3.4662 1.4198 17 6 1.5198 -2.4171 2.6363 18 6 2.8050 -3.2698 2.7896 19 8 3.2495 -3.4569 1.4288 20 6 2.0746 -3.6850 0.6315 21 1 1.9582 -4.6632 0.1650 22 1 -0.3633 0.0653 1.0256 23 1 -0.3634 0.8555 -0.5693 24 1 -0.3633 -0.9209 -0.4562 25 1 0.0003 3.0744 1.4867 26 1 1.7662 -1.3635 2.5046 27 1 0.8562 -2.5582 3.4894 28 1 2.5761 -4.2290 3.2539 29 1 3.5570 -2.7341 3.3688 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306649607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -50.788032 kcal Electronic energy + Delta-G solvation = -14556.002454 eV Core-core repulsion = 12059.246916 eV Total energy + Delta-G solvation = -2496.755538 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.61639 -39.40442 -36.54529 -34.87622 -33.46779 -31.45242 -28.34374 -26.82145 -24.82259 -23.44606 -21.90703 -20.00615 -18.80758 -18.18252 -17.29737 -16.91048 -16.12090 -16.02992 -15.67848 -15.27560 -14.25857 -14.21328 -13.80521 -13.45683 -13.22557 -13.11085 -12.74471 -12.65929 -12.34242 -12.19312 -12.12299 -11.62112 -11.08659 -10.93803 -10.31930 -10.14897 -9.63916 -8.33007 -5.96418 1.34936 1.38556 1.51329 1.98635 2.25580 2.40220 3.01150 3.06926 3.23379 3.62809 3.80040 3.91138 4.18999 4.22250 4.29163 4.50337 4.66327 4.73093 4.84986 4.96237 4.97083 5.05230 5.24672 5.39226 5.45147 6.02628 6.11301 6.52639 7.20980 7.51837 8.12453 8.68969 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.047969 B = 0.009908 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.569850 B = 2825.305964 C = 2906.518985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.462 5.462 3 C -0.347 4.347 4 H 0.064 0.936 5 C -0.001 4.001 6 N -0.893 5.893 7 Si 0.986 3.014 8 H -0.264 1.264 9 H -0.272 1.272 10 H -0.279 1.279 11 C 0.466 3.534 12 O -0.624 6.624 13 C -0.178 4.178 14 H 0.157 0.843 15 C -0.144 4.144 16 H 0.170 0.830 17 C -0.133 4.133 18 C 0.048 3.952 19 O -0.373 6.373 20 C 0.025 3.975 21 H 0.175 0.825 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.273 0.727 26 H 0.031 0.969 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 -9.440 1.845 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.181 5.181 3 C -0.475 4.475 4 H 0.082 0.918 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.810 3.190 8 H -0.189 1.189 9 H -0.197 1.197 10 H -0.204 1.204 11 C 0.256 3.744 12 O -0.510 6.510 13 C -0.199 4.199 14 H 0.174 0.826 15 C -0.163 4.163 16 H 0.187 0.813 17 C -0.171 4.171 18 C -0.028 4.028 19 O -0.292 6.292 20 C -0.033 4.033 21 H 0.192 0.808 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.994 -9.276 1.882 10.702 hybrid contribution 0.306 1.347 -0.087 1.384 sum -4.688 -7.930 1.795 9.385 Atomic orbital electron populations 1.21343 0.79368 0.99638 1.01119 1.43805 1.06660 1.04375 1.63266 1.19552 0.99143 0.86041 1.42772 0.91841 1.26017 0.97097 1.02644 0.94490 1.70078 1.20102 1.30314 1.32634 0.85037 0.78230 0.77306 0.78462 1.18852 1.19728 1.20442 1.20110 0.87330 0.85337 0.81650 1.90503 1.16282 1.87812 1.56424 1.22965 1.03813 0.93149 1.00014 0.82587 1.24115 1.00503 1.02235 0.89415 0.81259 1.22783 0.97628 0.98624 0.98032 1.23943 0.95259 0.99588 0.83990 1.88828 1.28829 1.92657 1.18904 1.24238 0.83861 0.95991 0.99231 0.80824 0.93516 0.93753 0.91185 0.91770 0.94976 0.86839 0.88421 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.78 8.59 127.77 1.10 6.88 15 2 N -0.46 -24.90 3.01 -658.89 -1.99 -26.88 15 3 C -0.35 -20.73 9.27 84.04 0.78 -19.95 15 4 H 0.06 4.12 7.43 -2.91 -0.02 4.10 15 5 C 0.00 -0.03 5.03 84.92 0.43 0.40 15 6 N -0.89 -48.33 10.84 21.66 0.23 -48.09 15 7 Si 0.99 43.90 29.58 68.60 2.03 45.93 15 8 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 11 C 0.47 24.26 5.77 87.66 0.51 24.76 15 12 O -0.62 -38.66 15.50 13.20 0.20 -38.45 15 13 C -0.18 -6.53 4.45 -11.54 -0.05 -6.58 15 14 H 0.16 4.56 7.70 -2.39 -0.02 4.54 15 15 C -0.14 -4.19 7.08 -9.85 -0.07 -4.26 15 16 H 0.17 3.28 8.14 -2.39 -0.02 3.26 15 17 C -0.13 -4.42 6.61 31.87 0.21 -4.21 15 18 C 0.05 1.54 7.72 72.66 0.56 2.10 15 19 O -0.37 -15.08 10.14 -132.72 -1.35 -16.43 15 20 C 0.02 0.80 7.49 31.00 0.23 1.03 15 21 H 0.18 3.96 8.14 -2.39 -0.02 3.94 15 22 H 0.05 2.19 7.44 -2.39 -0.02 2.17 15 23 H 0.04 2.09 7.27 -2.39 -0.02 2.07 15 24 H 0.07 2.48 6.46 -2.39 -0.02 2.47 15 25 H 0.27 13.76 8.31 -92.71 -0.77 12.99 15 26 H 0.03 1.44 7.13 -2.38 -0.02 1.42 15 27 H 0.11 2.88 8.14 -2.39 -0.02 2.87 15 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 29 H 0.08 2.56 8.14 -2.39 -0.02 2.55 15 Total: -1.00 -76.39 244.86 3.97 -72.42 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.15 Total: 11.35 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 3.69 Total: 0.16 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -1.75 Total: -74.98 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -1.14 Total: -54.88 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -76.39 3.97 -72.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306649607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.628 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds