Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86793 * 119.99709 * 2 1 4 4 H 1.48507 * 109.47086 * 240.00109 * 3 2 1 5 5 H 1.48496 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47090 * 120.00446 * 3 2 1 7 7 C 1.38947 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99672 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00328 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99413 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.81120 * 61.86052 * 12 10 9 14 14 C 1.55001 * 110.74652 * 298.54076 * 12 10 9 15 15 C 1.55819 * 102.78905 * 241.67834 * 14 12 10 16 16 H 1.08996 * 115.39062 * 158.83573 * 15 14 12 17 17 C 1.55821 * 105.32994 * 287.31369 * 15 14 12 18 18 C 1.55002 * 102.95099 * 72.59484 * 17 15 14 19 19 C 1.55825 * 110.74290 * 185.17669 * 12 10 9 20 20 H 1.08994 * 115.38803 * 319.48291 * 19 12 10 21 21 O 1.46535 * 101.24527 * 85.90507 * 19 12 10 22 22 H 0.96996 * 120.00504 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00143 * 0.02562 * 9 7 2 24 24 H 1.09002 * 110.74595 * 123.36020 * 14 12 10 25 25 H 1.08999 * 110.91037 * 0.07781 * 14 12 10 26 26 H 1.09002 * 110.75099 * 191.01396 * 17 15 14 27 27 H 1.08999 * 110.74965 * 314.18127 * 17 15 14 28 28 H 1.09007 * 110.74571 * 118.42225 * 18 17 15 29 29 H 1.09004 * 110.75000 * 241.76514 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2437 -4.8629 -0.0034 13 1 0.6350 -4.9574 -0.9026 14 6 0.3680 -4.9930 1.2689 15 6 0.9588 -6.2546 1.9669 16 1 0.7535 -6.3376 3.0341 17 6 0.4902 -7.4621 1.1006 18 6 1.3624 -7.3342 -0.1743 19 6 2.2245 -6.0667 0.1285 20 1 3.1480 -5.9819 -0.4442 21 8 2.3700 -6.1587 1.5837 22 1 -0.4851 0.8400 0.0004 23 1 0.3534 -2.3907 -0.0024 24 1 -0.6772 -5.1524 1.0036 25 1 0.4736 -4.1145 1.9054 26 1 0.6889 -8.4042 1.6116 27 1 -0.5681 -7.3735 0.8550 28 1 1.9957 -8.2127 -0.2987 29 1 0.7388 -7.1787 -1.0548 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307078918.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = -76.711247 kcal Electronic energy + Delta-G solvation = -14245.632705 eV Core-core repulsion = 11747.753052 eV Total energy + Delta-G solvation = -2497.879653 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55005 -37.62534 -33.90707 -32.07455 -31.28272 -30.23592 -29.30523 -25.06251 -22.55285 -21.28877 -20.18912 -18.80833 -17.86822 -16.62645 -15.90447 -15.21023 -14.75244 -14.20081 -13.90102 -13.55227 -13.17874 -12.44976 -12.25121 -11.62516 -11.50425 -11.29721 -11.19879 -10.98769 -10.73179 -10.68221 -10.42609 -10.26709 -10.07093 -9.57678 -9.47493 -8.29555 -7.94022 -6.39343 -3.80044 3.21825 3.27059 3.31971 3.91162 4.08016 4.22160 4.72878 4.79970 4.99850 5.08168 5.14837 5.31315 5.38143 5.46181 5.53159 5.72439 5.83801 5.92921 6.01168 6.13956 6.24096 6.42250 6.44762 6.50521 6.91742 7.57330 8.08349 8.63805 9.20070 9.57582 10.09405 10.78403 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.065550 B = 0.007854 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.052825 B = 3564.400500 C = 3733.665497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.453 3.547 11 O -0.590 6.590 12 C -0.130 4.130 13 H 0.093 0.907 14 C -0.139 4.139 15 C 0.058 3.942 16 H 0.126 0.874 17 C -0.148 4.148 18 C -0.151 4.151 19 C 0.093 3.907 20 H 0.134 0.866 21 O -0.365 6.365 22 H 0.272 0.728 23 H 0.392 0.608 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 -11.141 0.803 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.239 3.761 11 O -0.475 6.475 12 C -0.152 4.152 13 H 0.111 0.889 14 C -0.177 4.177 15 C 0.000 4.000 16 H 0.143 0.857 17 C -0.185 4.185 18 C -0.189 4.189 19 C 0.035 3.965 20 H 0.152 0.848 21 O -0.284 6.284 22 H 0.081 0.919 23 H 0.225 0.775 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.533 -10.954 0.943 11.283 hybrid contribution -0.512 0.923 -0.159 1.067 sum -3.046 -10.032 0.784 10.513 Atomic orbital electron populations 1.69603 1.05925 1.28215 1.50685 1.25248 0.95624 0.99675 0.97338 0.85922 0.78767 0.80475 0.79086 1.19915 1.20986 1.19891 1.19683 0.93367 0.82349 1.47595 0.88019 1.41856 1.09145 1.04543 1.64198 1.19621 0.88044 0.84559 0.83919 1.90509 1.13912 1.87204 1.55868 1.22898 0.97561 0.95658 0.99117 0.88920 1.23278 0.98759 0.99192 0.96481 1.24640 0.82296 0.94007 0.99073 0.85674 1.23241 0.99828 0.98935 0.96526 1.23362 0.98618 0.98880 0.98007 1.24499 0.97922 0.91607 0.82499 0.84793 1.90100 1.23620 1.94169 1.20474 0.91856 0.77451 0.90494 0.90087 0.91273 0.90796 0.90998 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.84 13.05 55.50 0.72 -24.12 15 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 15 3 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.30 -8.57 9.68 -14.93 -0.14 -8.72 15 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 15 9 N -0.56 -14.64 5.20 -10.96 -0.06 -14.69 15 10 C 0.45 11.14 6.97 -10.98 -0.08 11.06 15 11 O -0.59 -16.73 15.47 5.55 0.09 -16.64 15 12 C -0.13 -2.40 2.89 -89.21 -0.26 -2.66 15 13 H 0.09 1.50 7.80 -51.93 -0.41 1.10 15 14 C -0.14 -2.24 6.10 -24.17 -0.15 -2.38 15 15 C 0.06 0.85 5.71 -23.72 -0.14 0.71 15 16 H 0.13 1.55 8.14 -51.93 -0.42 1.13 15 17 C -0.15 -1.74 6.51 -24.17 -0.16 -1.90 15 18 C -0.15 -1.92 6.55 -23.93 -0.16 -2.08 15 19 C 0.09 1.60 4.64 -23.48 -0.11 1.49 15 20 H 0.13 2.43 7.74 -51.93 -0.40 2.03 15 21 O -0.37 -6.93 11.65 -35.23 -0.41 -7.34 15 22 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 23 H 0.39 9.75 7.89 -40.82 -0.32 9.43 15 24 H 0.08 1.02 7.81 -51.93 -0.41 0.62 15 25 H 0.08 1.49 7.74 -51.93 -0.40 1.09 15 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.07 0.75 7.81 -51.93 -0.41 0.35 15 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 29 H 0.07 0.85 7.81 -51.93 -0.41 0.45 15 LS Contribution 245.29 15.07 3.70 3.70 Total: -1.00 -32.25 245.29 -5.79 -38.04 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.53 Total: 8.66 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.28 Total: -3.96 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.67 Total: -38.81 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.32 Total: -23.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.25 -5.79 -38.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307078918.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.668 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds