Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86793 * 119.99709 * 2 1 4 4 H 1.48507 * 109.47086 * 240.00109 * 3 2 1 5 5 H 1.48496 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47090 * 120.00446 * 3 2 1 7 7 C 1.38947 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99672 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00328 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99413 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.81120 * 61.86052 * 12 10 9 14 14 C 1.55001 * 110.74652 * 298.54076 * 12 10 9 15 15 C 1.55819 * 102.78905 * 241.67834 * 14 12 10 16 16 H 1.08996 * 115.39062 * 158.83573 * 15 14 12 17 17 C 1.55821 * 105.32994 * 287.31369 * 15 14 12 18 18 C 1.55002 * 102.95099 * 72.59484 * 17 15 14 19 19 C 1.55825 * 110.74290 * 185.17669 * 12 10 9 20 20 H 1.08994 * 115.38803 * 319.48291 * 19 12 10 21 21 O 1.46535 * 101.24527 * 85.90507 * 19 12 10 22 22 H 0.96996 * 120.00504 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00143 * 0.02562 * 9 7 2 24 24 H 1.09002 * 110.74595 * 123.36020 * 14 12 10 25 25 H 1.08999 * 110.91037 * 0.07781 * 14 12 10 26 26 H 1.09002 * 110.75099 * 191.01396 * 17 15 14 27 27 H 1.08999 * 110.74965 * 314.18127 * 17 15 14 28 28 H 1.09007 * 110.74571 * 118.42225 * 18 17 15 29 29 H 1.09004 * 110.75000 * 241.76514 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2437 -4.8629 -0.0034 13 1 0.6350 -4.9574 -0.9026 14 6 0.3680 -4.9930 1.2689 15 6 0.9588 -6.2546 1.9669 16 1 0.7535 -6.3376 3.0341 17 6 0.4902 -7.4621 1.1006 18 6 1.3624 -7.3342 -0.1743 19 6 2.2245 -6.0667 0.1285 20 1 3.1480 -5.9819 -0.4442 21 8 2.3700 -6.1587 1.5837 22 1 -0.4851 0.8400 0.0004 23 1 0.3534 -2.3907 -0.0024 24 1 -0.6772 -5.1524 1.0036 25 1 0.4736 -4.1145 1.9054 26 1 0.6889 -8.4042 1.6116 27 1 -0.5681 -7.3735 0.8550 28 1 1.9957 -8.2127 -0.2987 29 1 0.7388 -7.1787 -1.0548 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307078918.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = -100.535675 kcal Electronic energy + Delta-G solvation = -14246.665810 eV Core-core repulsion = 11747.753052 eV Total energy + Delta-G solvation = -2498.912758 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.88453 -39.53762 -36.01235 -33.64888 -33.01182 -31.60568 -30.51614 -27.08645 -23.99915 -22.54414 -21.41776 -20.56815 -19.89024 -18.11529 -17.48066 -16.71848 -16.35931 -15.84793 -15.65515 -14.98719 -14.95553 -14.10445 -13.56316 -13.46448 -13.01716 -12.67341 -12.51226 -12.47028 -12.35367 -12.13205 -11.95783 -11.83375 -11.53372 -11.30858 -10.86613 -10.27371 -10.04730 -8.49456 -5.98920 1.37454 1.39155 1.50519 2.01591 2.27811 2.86149 3.16443 3.22466 3.62465 3.75382 3.78702 4.01648 4.18795 4.33449 4.35098 4.49527 4.63949 4.67674 4.92837 5.02360 5.07985 5.16462 5.19580 5.30683 5.37894 5.72095 5.96676 6.55946 7.08662 7.52266 8.08357 8.67704 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.065550 B = 0.007854 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.052825 B = 3564.400500 C = 3733.665497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.341 4.341 8 H 0.075 0.925 9 N -0.568 5.568 10 C 0.445 3.555 11 O -0.637 6.637 12 C -0.127 4.127 13 H 0.121 0.879 14 C -0.136 4.136 15 C 0.052 3.948 16 H 0.145 0.855 17 C -0.136 4.136 18 C -0.138 4.138 19 C 0.080 3.920 20 H 0.111 0.889 21 O -0.406 6.406 22 H 0.279 0.721 23 H 0.397 0.603 24 H 0.114 0.886 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 -12.102 0.710 13.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.199 1.199 7 C -0.470 4.470 8 H 0.093 0.907 9 N -0.204 5.204 10 C 0.233 3.767 11 O -0.525 6.525 12 C -0.148 4.148 13 H 0.139 0.861 14 C -0.174 4.174 15 C -0.005 4.005 16 H 0.163 0.837 17 C -0.173 4.173 18 C -0.176 4.176 19 C 0.022 3.978 20 H 0.128 0.872 21 O -0.326 6.326 22 H 0.089 0.911 23 H 0.231 0.769 24 H 0.132 0.868 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.290 -11.929 0.848 12.706 hybrid contribution 0.038 1.224 -0.110 1.230 sum -4.252 -10.705 0.739 11.542 Atomic orbital electron populations 1.69657 1.06781 1.29477 1.49961 1.26037 0.96581 1.02344 0.96024 0.84992 0.77825 0.76589 0.78939 1.19624 1.19101 1.19876 1.19653 0.92658 0.84258 1.50446 0.90670 1.41911 1.09243 1.04600 1.64643 1.20805 0.87947 0.86242 0.81735 1.90468 1.16312 1.88212 1.57462 1.22952 0.98029 0.92172 1.01661 0.86112 1.23307 1.00422 0.98889 0.94747 1.24982 0.80143 0.94591 1.00753 0.83745 1.23237 1.00969 0.98034 0.95085 1.23331 0.98314 0.96493 0.99458 1.24571 0.97675 0.93544 0.82026 0.87151 1.90064 1.26629 1.94463 1.21439 0.91146 0.76924 0.86753 0.93273 0.89532 0.88064 0.89695 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.18 13.05 21.66 0.28 -49.90 15 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 15 3 Si 0.99 43.78 29.55 68.60 2.03 45.81 15 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 7 C -0.34 -20.09 9.68 84.04 0.81 -19.28 15 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 15 9 N -0.57 -30.46 5.20 -306.98 -1.60 -32.06 15 10 C 0.44 22.57 6.97 87.66 0.61 23.18 15 11 O -0.64 -37.94 15.47 -3.05 -0.05 -37.99 15 12 C -0.13 -4.58 2.89 -9.88 -0.03 -4.61 15 13 H 0.12 3.65 7.80 -2.39 -0.02 3.63 15 14 C -0.14 -4.13 6.10 32.25 0.20 -3.94 15 15 C 0.05 1.41 5.71 32.54 0.19 1.60 15 16 H 0.15 3.23 8.14 -2.39 -0.02 3.21 15 17 C -0.14 -2.61 6.51 32.25 0.21 -2.40 15 18 C -0.14 -3.06 6.55 32.41 0.21 -2.85 15 19 C 0.08 2.72 4.64 32.70 0.15 2.87 15 20 H 0.11 4.17 7.74 -2.39 -0.02 4.15 15 21 O -0.41 -15.32 11.65 -148.98 -1.74 -17.06 15 22 H 0.28 14.22 8.31 -92.71 -0.77 13.45 15 23 H 0.40 20.05 7.89 -92.71 -0.73 19.32 15 24 H 0.11 2.60 7.81 -2.39 -0.02 2.58 15 25 H 0.05 1.80 7.74 -2.39 -0.02 1.78 15 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 27 H 0.10 1.45 7.81 -2.39 -0.02 1.43 15 28 H 0.08 1.68 8.14 -2.38 -0.02 1.66 15 29 H 0.10 1.75 7.81 -2.38 -0.02 1.73 15 Total: -1.00 -72.39 245.29 2.18 -70.21 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.43 Total: 26.48 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 2.82 Total: -5.49 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -1.31 Total: -81.96 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -1.78 Total: -55.05 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -72.39 2.18 -70.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307078918.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.326 kcal (2) G-P(sol) polarization free energy of solvation -72.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds