Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47649 * 2 1 4 4 C 1.50696 * 109.47211 * 240.00001 * 2 1 3 5 5 H 1.08007 * 120.00176 * 240.00061 * 4 2 1 6 6 C 1.37878 * 120.00132 * 60.00227 * 4 2 1 7 7 N 1.31516 * 119.99912 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00063 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47305 * 89.99698 * 8 6 4 10 10 H 1.48502 * 109.47066 * 209.99798 * 8 6 4 11 11 H 1.48495 * 109.47128 * 329.99652 * 8 6 4 12 12 C 1.53004 * 109.47035 * 120.00315 * 2 1 3 13 13 N 1.46510 * 109.46758 * 299.99533 * 12 2 1 14 14 C 1.37348 * 125.83294 * 270.15059 * 13 12 2 15 15 N 1.29399 * 108.82747 * 180.30548 * 14 13 12 16 16 N 1.40167 * 108.14354 * 359.73668 * 15 14 13 17 17 H 0.97003 * 126.35433 * 179.97438 * 16 15 14 18 18 C 1.34820 * 125.82785 * 90.00243 * 13 12 2 19 19 O 1.21813 * 126.30395 * 359.96687 * 18 13 12 20 20 H 1.09001 * 109.47047 * 300.00616 * 1 2 3 21 21 H 1.09005 * 109.46807 * 60.00042 * 1 2 3 22 22 H 1.08999 * 109.47625 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47442 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.47072 * 300.00372 * 3 2 1 25 25 H 1.08998 * 109.46703 * 59.99814 * 3 2 1 26 26 H 0.96993 * 120.00098 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47023 * 180.02562 * 12 2 1 28 28 H 1.08990 * 109.47379 * 59.99537 * 12 2 1 29 29 H 1.08006 * 125.59005 * 0.07729 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4455 14 6 2.1915 0.9932 3.1003 15 7 1.4736 1.3531 4.1149 16 7 0.3210 0.5559 4.1389 17 1 -0.3972 0.6028 4.7892 18 6 0.3961 -0.2896 3.0898 19 8 -0.4263 -1.1348 2.7844 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1301 1.4424 -0.0005 24 1 1.6768 1.9564 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 0.7091 1.1615 -3.4843 27 1 3.1300 -0.7209 1.2495 28 1 1.6766 -1.7489 1.2493 29 1 3.1403 1.4246 2.8171 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307225814.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = 35.495642 kcal Electronic energy + Delta-G solvation = -14548.391187 eV Core-core repulsion = 12087.669941 eV Total energy + Delta-G solvation = -2460.721246 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.97473 -36.74371 -36.44288 -33.38061 -30.99289 -29.96528 -26.05729 -25.78302 -25.08226 -22.64066 -21.09548 -19.04095 -17.65924 -16.49637 -15.75027 -15.33902 -14.87616 -14.62665 -14.39674 -13.19082 -12.81552 -12.36125 -12.17395 -11.58852 -11.42861 -11.17385 -10.75332 -10.72827 -10.46136 -10.36780 -10.20059 -9.76105 -9.56064 -9.27970 -8.81434 -8.39935 -8.11159 -6.03472 -4.15999 2.33698 2.52031 3.25836 3.26692 3.34039 3.35913 3.77139 4.36833 5.10700 5.22705 5.33541 5.74168 6.13826 6.31354 6.39882 6.64974 6.80320 6.90683 6.96160 7.10738 7.17087 7.40476 7.58103 7.67088 7.98526 8.05908 8.11602 8.34765 8.61066 8.84289 9.50172 10.97402 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.057586 B = 0.009218 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.113985 B = 3036.841283 C = 3149.002486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 C -0.133 4.133 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.134 3.866 13 N -0.539 5.539 14 C 0.271 3.729 15 N -0.308 5.308 16 N -0.561 5.561 17 H 0.447 0.553 18 C 0.646 3.354 19 O -0.557 6.557 20 H 0.003 0.997 21 H 0.080 0.920 22 H 0.029 0.971 23 H 0.027 0.973 24 H 0.086 0.914 25 H 0.007 0.993 26 H 0.261 0.739 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 1.250 8.170 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 C -0.190 4.190 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.014 3.986 13 N -0.266 5.266 14 C -0.028 4.028 15 N -0.133 5.133 16 N -0.312 5.312 17 H 0.294 0.706 18 C 0.343 3.657 19 O -0.430 6.430 20 H 0.022 0.978 21 H 0.099 0.901 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.105 0.895 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.922 1.346 8.510 9.098 hybrid contribution 0.016 -0.783 -1.193 1.427 sum 2.939 0.563 7.318 7.906 Atomic orbital electron populations 1.21731 0.97092 0.99456 0.99699 1.18492 0.93492 0.92797 0.90038 1.21864 0.98113 0.98482 1.00568 1.20919 1.31970 1.12216 0.89827 0.92383 1.24883 0.94754 0.94849 0.98894 1.69824 1.36289 1.22623 1.23306 0.86561 0.79223 0.79402 0.82591 1.20686 1.21262 1.19886 1.22269 0.98518 0.96428 0.81370 1.46362 1.19541 1.32849 1.27828 1.25817 0.99318 0.88804 0.88880 1.76908 0.96665 1.18513 1.21210 1.46626 1.21291 1.34213 1.29032 0.70554 1.16831 0.83394 0.83798 0.81633 1.91088 1.43636 1.36818 1.71429 0.97813 0.90108 0.95180 0.95369 0.89532 0.97366 0.92925 0.89987 0.89920 0.76009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 7.35 37.16 0.27 -2.78 15 2 C 0.05 1.22 0.57 -155.66 -0.09 1.13 15 3 C -0.13 -2.90 7.80 37.16 0.29 -2.61 15 4 C -0.51 -12.94 8.01 -34.44 -0.28 -13.21 15 5 H 0.06 1.43 7.74 -52.48 -0.41 1.03 15 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 15 7 N -0.88 -23.72 9.35 55.43 0.52 -23.20 15 8 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 15 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 12 C 0.13 2.59 4.94 -4.03 -0.02 2.57 15 13 N -0.54 -9.63 2.20 -122.64 -0.27 -9.90 15 14 C 0.27 3.93 10.79 -89.13 -0.96 2.97 15 15 N -0.31 -4.65 12.64 29.87 0.38 -4.28 15 16 N -0.56 -8.93 7.40 27.71 0.21 -8.73 15 17 H 0.45 5.77 8.96 -182.54 -1.64 4.13 15 18 C 0.65 12.58 7.40 -86.73 -0.64 11.94 15 19 O -0.56 -12.78 17.04 5.09 0.09 -12.69 15 20 H 0.00 0.07 6.21 -51.93 -0.32 -0.25 15 21 H 0.08 2.20 6.07 -51.93 -0.32 1.88 15 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 15 24 H 0.09 2.17 6.07 -51.93 -0.32 1.85 15 25 H 0.01 0.15 6.37 -51.93 -0.33 -0.18 15 26 H 0.26 6.77 8.31 -40.82 -0.34 6.43 15 27 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 28 H 0.08 1.69 8.08 -51.93 -0.42 1.27 15 29 H 0.22 2.27 8.06 -52.48 -0.42 1.84 15 LS Contribution 241.80 15.07 3.64 3.64 Total: -1.00 -30.09 241.80 -6.55 -36.63 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.57 Total: 1.53 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.52 Total: 1.69 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.83 Total: -46.10 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.09 -6.55 -36.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307225814.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.129 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds