Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47649 * 2 1 4 4 C 1.50696 * 109.47211 * 240.00001 * 2 1 3 5 5 H 1.08007 * 120.00176 * 240.00061 * 4 2 1 6 6 C 1.37878 * 120.00132 * 60.00227 * 4 2 1 7 7 N 1.31516 * 119.99912 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00063 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47305 * 89.99698 * 8 6 4 10 10 H 1.48502 * 109.47066 * 209.99798 * 8 6 4 11 11 H 1.48495 * 109.47128 * 329.99652 * 8 6 4 12 12 C 1.53004 * 109.47035 * 120.00315 * 2 1 3 13 13 N 1.46510 * 109.46758 * 299.99533 * 12 2 1 14 14 C 1.37348 * 125.83294 * 270.15059 * 13 12 2 15 15 N 1.29399 * 108.82747 * 180.30548 * 14 13 12 16 16 N 1.40167 * 108.14354 * 359.73668 * 15 14 13 17 17 H 0.97003 * 126.35433 * 179.97438 * 16 15 14 18 18 C 1.34820 * 125.82785 * 90.00243 * 13 12 2 19 19 O 1.21813 * 126.30395 * 359.96687 * 18 13 12 20 20 H 1.09001 * 109.47047 * 300.00616 * 1 2 3 21 21 H 1.09005 * 109.46807 * 60.00042 * 1 2 3 22 22 H 1.08999 * 109.47625 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47442 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.47072 * 300.00372 * 3 2 1 25 25 H 1.08998 * 109.46703 * 59.99814 * 3 2 1 26 26 H 0.96993 * 120.00098 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47023 * 180.02562 * 12 2 1 28 28 H 1.08990 * 109.47379 * 59.99537 * 12 2 1 29 29 H 1.08006 * 125.59005 * 0.07729 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4455 14 6 2.1915 0.9932 3.1003 15 7 1.4736 1.3531 4.1149 16 7 0.3210 0.5559 4.1389 17 1 -0.3972 0.6028 4.7892 18 6 0.3961 -0.2896 3.0898 19 8 -0.4263 -1.1348 2.7844 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1301 1.4424 -0.0005 24 1 1.6768 1.9564 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 0.7091 1.1615 -3.4843 27 1 3.1300 -0.7209 1.2495 28 1 1.6766 -1.7489 1.2493 29 1 3.1403 1.4246 2.8171 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307225814.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = 16.109349 kcal Electronic energy + Delta-G solvation = -14549.231840 eV Core-core repulsion = 12087.669941 eV Total energy + Delta-G solvation = -2461.561899 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.34264 -38.28624 -38.14613 -34.99658 -32.77319 -31.33039 -27.76154 -27.59830 -26.97962 -23.95086 -22.57022 -20.71561 -19.08572 -18.18555 -17.45295 -16.89412 -16.51434 -16.18063 -15.67624 -14.96265 -14.47507 -14.19017 -13.66401 -13.27103 -13.06842 -12.93076 -12.55628 -12.49508 -12.23560 -12.09370 -12.06101 -11.41387 -11.28168 -10.89852 -10.66210 -10.36631 -9.56198 -7.98822 -6.16786 1.14195 1.17106 1.46734 1.50290 1.57442 1.77554 2.46622 2.59109 3.25473 3.82277 4.15110 4.33807 4.47264 4.67635 4.83653 4.95276 5.08982 5.15613 5.22081 5.41043 5.54722 5.64305 5.69405 5.94419 6.07683 6.24883 6.41818 6.72642 6.90440 7.18213 7.52059 9.00082 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.057586 B = 0.009218 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.113985 B = 3036.841283 C = 3149.002486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.045 3.955 3 C -0.120 4.120 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.949 3.051 9 H -0.288 1.288 10 H -0.288 1.288 11 H -0.262 1.262 12 C 0.145 3.855 13 N -0.543 5.543 14 C 0.278 3.722 15 N -0.306 5.306 16 N -0.548 5.548 17 H 0.459 0.541 18 C 0.631 3.369 19 O -0.602 6.602 20 H 0.002 0.998 21 H 0.053 0.947 22 H 0.006 0.994 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.257 0.743 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 1.656 8.904 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.044 3.956 3 C -0.178 4.178 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.776 3.224 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.186 1.186 12 C 0.024 3.976 13 N -0.269 5.269 14 C -0.020 4.020 15 N -0.131 5.131 16 N -0.300 5.300 17 H 0.308 0.692 18 C 0.328 3.672 19 O -0.479 6.479 20 H 0.021 0.979 21 H 0.072 0.928 22 H 0.026 0.974 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 4.845 1.785 9.290 10.629 hybrid contribution -0.598 -0.880 -1.372 1.736 sum 4.247 0.905 7.918 9.031 Atomic orbital electron populations 1.21558 0.99220 0.97377 0.98174 1.18523 0.91686 0.94042 0.91327 1.21670 0.99333 0.97117 0.99664 1.21287 1.31631 1.12306 0.90802 0.91956 1.25559 0.95134 0.95488 1.01460 1.69972 1.37313 1.23790 1.23461 0.85691 0.78938 0.78133 0.79620 1.21409 1.21381 1.18634 1.22004 1.00331 0.94996 0.80256 1.46280 1.19433 1.33655 1.27512 1.26782 1.00244 0.87232 0.87710 1.76962 0.96258 1.18224 1.21626 1.46618 1.21869 1.33262 1.28207 0.69164 1.17095 0.83577 0.83995 0.82516 1.91046 1.45267 1.38800 1.72751 0.97919 0.92773 0.97445 0.93159 0.92926 0.95734 0.93316 0.86274 0.91655 0.71470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.34 7.35 71.98 0.53 -4.82 15 2 C 0.05 2.03 0.57 -52.93 -0.03 2.00 15 3 C -0.12 -4.98 7.80 71.98 0.56 -4.42 15 4 C -0.52 -25.88 8.01 25.60 0.21 -25.68 15 5 H 0.06 2.98 7.74 -2.91 -0.02 2.95 15 6 C 0.02 1.18 5.15 84.65 0.44 1.62 15 7 N -0.91 -49.10 9.35 21.45 0.20 -48.90 15 8 Si 0.95 41.30 29.54 68.60 2.03 43.33 15 9 H -0.29 -12.74 7.11 99.48 0.71 -12.03 15 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 15 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 12 C 0.15 5.27 4.94 86.38 0.43 5.70 15 13 N -0.54 -18.09 2.20 -660.08 -1.46 -19.55 15 14 C 0.28 6.96 10.79 179.83 1.94 8.90 15 15 N -0.31 -8.28 12.64 -59.42 -0.75 -9.04 15 16 N -0.55 -16.47 7.40 -184.31 -1.36 -17.83 15 17 H 0.46 11.16 8.96 -213.27 -1.91 9.24 15 18 C 0.63 23.93 7.40 178.99 1.33 25.25 15 19 O -0.60 -27.90 17.04 -4.71 -0.08 -27.98 15 20 H 0.00 0.09 6.21 -2.39 -0.01 0.08 15 21 H 0.05 3.01 6.07 -2.38 -0.01 3.00 15 22 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.05 2.58 6.07 -2.39 -0.01 2.56 15 25 H 0.02 0.90 6.37 -2.39 -0.02 0.88 15 26 H 0.26 13.53 8.31 -92.71 -0.77 12.76 15 27 H 0.12 3.45 8.14 -2.39 -0.02 3.44 15 28 H 0.06 2.61 8.08 -2.39 -0.02 2.59 15 29 H 0.27 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -65.03 241.80 3.23 -61.81 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -0.74 Total: 9.60 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 5.39 Total: 8.56 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -3.37 Total: -95.32 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.08 Total: -27.98 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -65.03 3.23 -61.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307225814.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.918 kcal (2) G-P(sol) polarization free energy of solvation -65.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds