Wall clock time and date at job start Mon Mar 30 2020 02:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00038 * 2 1 4 4 H 1.48505 * 109.46866 * 269.99249 * 3 2 1 5 5 H 1.48498 * 109.47456 * 29.99373 * 3 2 1 6 6 H 1.48501 * 109.47224 * 149.99911 * 3 2 1 7 7 C 1.38810 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00175 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.47204 * 125.79973 * 359.97438 * 9 7 2 11 11 C 1.54378 * 107.21094 * 179.10177 * 10 9 7 12 12 C 1.55565 * 102.90284 * 337.54516 * 11 10 9 13 13 H 1.09004 * 113.17392 * 156.19426 * 12 11 10 14 14 C 1.53066 * 107.31749 * 280.66131 * 12 11 10 15 15 C 1.52900 * 110.27875 * 164.96172 * 14 12 11 16 16 O 1.45729 * 108.51218 * 299.91520 * 15 14 12 17 17 C 1.34742 * 114.68723 * 56.05525 * 16 15 14 18 18 O 1.20823 * 120.10500 * 130.28456 * 17 16 15 19 19 C 1.46767 * 125.79957 * 179.97438 * 9 7 2 20 20 H 1.09002 * 109.75003 * 86.20023 * 19 9 7 21 21 H 0.96997 * 119.99369 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.89430 * 59.70484 * 10 9 7 23 23 H 1.09002 * 110.03439 * 298.58086 * 10 9 7 24 24 H 1.09004 * 110.72742 * 219.19333 * 11 10 9 25 25 H 1.08996 * 110.87930 * 95.97287 * 11 10 9 26 26 H 1.09002 * 109.33558 * 285.21558 * 14 12 11 27 27 H 1.09002 * 109.33364 * 44.71476 * 14 12 11 28 28 H 1.09000 * 109.62386 * 59.61807 * 15 14 12 29 29 H 1.08996 * 109.63118 * 180.20571 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1390 -2.5368 0.0005 11 6 -0.4445 -4.0498 -0.0226 12 6 0.8595 -4.6585 -0.6134 13 1 1.0089 -5.7025 -0.3376 14 6 0.8085 -4.4600 -2.1303 15 6 2.1918 -4.6862 -2.7412 16 8 3.1186 -3.7259 -2.1561 17 6 3.1883 -3.7586 -0.8109 18 8 4.2627 -3.8146 -0.2609 19 6 1.9271 -3.7268 0.0005 20 1 2.1401 -4.0349 1.0242 21 1 -0.4849 0.8401 -0.0004 22 1 -0.5602 -2.0598 -0.8844 23 1 -0.5600 -2.0871 0.8998 24 1 -1.2964 -4.2616 -0.6689 25 1 -0.6237 -4.4254 0.9848 26 1 0.1023 -5.1684 -2.5634 27 1 0.4783 -3.4448 -2.3504 28 1 2.5276 -5.6997 -2.5216 29 1 2.1442 -4.5388 -3.8201 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307281879.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:18 Heat of formation + Delta-G solvation = -55.464070 kcal Electronic energy + Delta-G solvation = -14848.496806 eV Core-core repulsion = 12351.538500 eV Total energy + Delta-G solvation = -2496.958306 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30377 -37.36151 -36.36935 -33.17753 -30.95428 -29.26309 -28.01387 -24.83578 -23.00839 -22.00106 -20.12741 -18.93920 -17.38403 -16.27723 -15.96474 -15.12861 -14.93328 -14.40899 -14.15578 -13.47149 -12.79236 -12.32941 -12.14009 -12.12684 -11.60506 -11.40250 -11.14222 -10.84912 -10.79987 -10.24811 -10.12859 -9.99004 -9.88519 -9.75165 -9.12231 -8.67655 -6.99925 -5.80676 -3.16448 2.48853 3.39816 3.44861 3.48616 3.84177 4.45331 4.87373 4.90586 5.05173 5.13719 5.40041 5.43530 5.49750 5.64338 5.70779 5.92421 6.00763 6.13313 6.31582 6.39644 6.44808 6.70105 7.45892 7.48131 7.62864 7.75256 8.08875 8.13906 9.10854 9.68798 10.29799 11.30668 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.033114 B = 0.013612 C = 0.011251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.356146 B = 2056.440326 C = 2488.080342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.001 3.999 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.579 5.579 10 C 0.176 3.824 11 C -0.140 4.140 12 C -0.106 4.106 13 H 0.085 0.915 14 C -0.151 4.151 15 C 0.079 3.921 16 O -0.370 6.370 17 C 0.496 3.504 18 O -0.480 6.480 19 C 0.123 3.877 20 H 0.062 0.938 21 H 0.254 0.746 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -9.931 -3.884 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.196 4.196 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.053 3.947 11 C -0.178 4.178 12 C -0.125 4.125 13 H 0.103 0.897 14 C -0.189 4.189 15 C 0.005 3.995 16 O -0.289 6.289 17 C 0.336 3.664 18 O -0.361 6.361 19 C 0.014 3.986 20 H 0.080 0.920 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.421 -9.584 -3.723 10.379 hybrid contribution 0.293 0.879 0.032 0.927 sum -1.128 -8.705 -3.691 9.522 Atomic orbital electron populations 1.69961 1.04858 1.25368 1.56359 1.24771 0.95761 0.97731 1.01345 0.86071 0.78780 0.82941 0.77773 1.21340 1.21464 1.20443 1.19068 0.90538 0.81993 1.44803 0.90362 1.44280 1.01576 0.98093 1.86711 1.21299 0.83179 0.88599 1.01662 1.23062 0.95589 0.99268 0.99876 1.22513 0.96982 0.98085 0.94929 0.89674 1.22187 0.96566 1.04802 0.95300 1.23188 0.87871 0.90196 0.98272 1.86646 1.63266 1.56851 1.22159 1.23809 0.91242 0.69650 0.81720 1.90520 1.33660 1.41583 1.70299 1.21523 0.90037 0.90169 0.96888 0.92044 0.93557 0.93072 0.93148 0.91457 0.92054 0.90403 0.88877 0.91998 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 10.34 55.49 0.57 -25.84 15 2 C 0.00 0.02 5.49 -17.43 -0.10 -0.08 15 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 15 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.24 -6.74 9.65 -15.06 -0.15 -6.88 15 8 H 0.08 2.30 7.44 -52.48 -0.39 1.91 15 9 N -0.58 -14.60 3.20 -164.89 -0.53 -15.13 15 10 C 0.18 4.05 4.64 -2.94 -0.01 4.03 15 11 C -0.14 -2.36 6.34 -24.64 -0.16 -2.51 15 12 C -0.11 -1.70 3.63 -88.47 -0.32 -2.03 15 13 H 0.09 1.13 8.14 -51.93 -0.42 0.70 15 14 C -0.15 -2.22 5.11 -26.75 -0.14 -2.35 15 15 C 0.08 1.13 7.05 37.11 0.26 1.39 15 16 O -0.37 -7.63 10.64 -40.63 -0.43 -8.06 15 17 C 0.50 11.12 6.15 35.67 0.22 11.34 15 18 O -0.48 -11.89 17.92 -18.71 -0.34 -12.23 15 19 C 0.12 2.62 3.29 -68.52 -0.23 2.40 15 20 H 0.06 1.33 8.14 -51.93 -0.42 0.90 15 21 H 0.25 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.05 1.28 7.18 -51.93 -0.37 0.91 15 23 H 0.05 1.28 7.51 -51.93 -0.39 0.90 15 24 H 0.07 0.98 7.98 -51.93 -0.41 0.57 15 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 15 27 H 0.09 1.67 7.08 -51.93 -0.37 1.30 15 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 238.67 15.07 3.60 3.60 Total: -1.00 -32.17 238.67 -6.37 -38.54 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.61 Total: -3.80 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.61 Total: 5.31 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.05 Total: -40.97 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.77 Total: -20.29 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.17 -6.37 -38.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307281879.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.925 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds