Wall clock time and date at job start Mon Mar 30 2020 02:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47177 * 274.98488 * 3 2 1 5 5 H 1.48502 * 109.47127 * 34.97954 * 3 2 1 6 6 H 1.48493 * 109.47253 * 154.98126 * 3 2 1 7 7 C 1.40042 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00096 * 186.15113 * 7 2 1 9 9 C 1.46375 * 120.00170 * 6.15206 * 7 2 1 10 10 O 1.21695 * 119.99693 * 353.93877 * 9 7 2 11 11 N 1.34772 * 120.00131 * 173.94085 * 9 7 2 12 12 C 1.46501 * 119.99823 * 180.27515 * 11 9 7 13 13 C 1.53003 * 109.47352 * 179.72306 * 12 11 9 14 14 H 1.09008 * 109.96602 * 306.27256 * 13 12 11 15 15 C 1.54278 * 109.98696 * 185.00056 * 13 12 11 16 16 C 1.54978 * 103.75053 * 217.52606 * 15 13 12 17 17 C 1.54893 * 102.33325 * 37.08559 * 16 15 13 18 18 C 1.51441 * 109.98182 * 67.58104 * 13 12 11 19 19 O 1.20759 * 126.34416 * 298.97176 * 18 13 12 20 20 H 0.97000 * 120.00488 * 0.02562 * 1 2 3 21 21 H 0.96992 * 120.00439 * 359.97438 * 11 9 7 22 22 H 1.09002 * 109.47294 * 299.72437 * 12 11 9 23 23 H 1.09008 * 109.47412 * 59.72371 * 12 11 9 24 24 H 1.09002 * 110.57162 * 336.09659 * 15 13 12 25 25 H 1.09008 * 110.56704 * 98.95975 * 15 13 12 26 26 H 1.09001 * 110.83311 * 155.29557 * 16 15 13 27 27 H 1.09002 * 110.83502 * 278.87426 * 16 15 13 28 28 H 1.09000 * 110.44182 * 81.11173 * 17 16 15 29 29 H 1.08996 * 110.44128 * 203.50835 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4946 2.6200 0.8026 6 1 3.5868 1.4123 0.5921 7 6 2.0070 -1.2127 0.0005 8 1 3.0824 -1.2153 0.1008 9 6 1.2816 -2.4769 -0.1347 10 8 0.0646 -2.4828 -0.1367 11 7 1.9613 -3.6342 -0.2571 12 6 1.2353 -4.8987 -0.3985 13 6 2.2353 -6.0497 -0.5255 14 1 2.9383 -5.8446 -1.3330 15 6 1.4870 -7.3705 -0.8004 16 6 2.2879 -8.4227 0.0080 17 6 2.6811 -7.6327 1.2810 18 6 2.9830 -6.2319 0.7789 19 8 3.6888 -5.4146 1.3193 20 1 -0.4851 0.8400 -0.0004 21 1 2.9313 -3.6294 -0.2558 22 1 0.6079 -5.0576 0.4786 23 1 0.6098 -4.8608 -1.2905 24 1 0.4601 -7.3111 -0.4399 25 1 1.5075 -7.6080 -1.8641 26 1 1.6603 -9.2774 0.2605 27 1 3.1747 -8.7402 -0.5406 28 1 1.8519 -7.6132 1.9882 29 1 3.5647 -8.0720 1.7438 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307564542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:17 Heat of formation + Delta-G solvation = -93.358190 kcal Electronic energy + Delta-G solvation = -13763.121192 eV Core-core repulsion = 11264.519673 eV Total energy + Delta-G solvation = -2498.601519 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.81792 -37.12169 -36.13147 -33.27762 -32.22941 -29.58143 -27.10255 -26.11762 -23.45162 -21.14248 -19.53657 -18.91763 -17.12946 -16.41142 -15.64683 -15.16547 -14.62245 -14.16275 -13.90238 -13.80277 -13.10103 -12.79699 -12.67704 -12.12771 -11.57838 -11.34180 -11.23729 -11.18704 -10.93912 -10.86252 -10.68053 -10.35421 -10.15028 -9.19784 -8.78847 -7.56029 -7.44015 -6.13739 -4.56569 2.12662 3.18354 3.25207 3.29904 4.13456 4.19886 4.46808 4.63687 4.65048 4.85149 5.04993 5.18392 5.39509 5.48685 5.52986 5.68344 5.77806 5.80513 5.89561 5.97559 6.11780 6.42293 6.48350 7.50510 7.67126 8.02586 8.16134 8.41065 9.09086 9.60420 10.65738 10.84367 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.060688 B = 0.006996 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.266874 B = 4001.557930 C = 4286.262277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.585 6.585 11 N -0.767 5.767 12 C 0.149 3.851 13 C -0.163 4.163 14 H 0.103 0.897 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.184 4.184 18 C 0.369 3.631 19 O -0.430 6.430 20 H 0.267 0.733 21 H 0.385 0.615 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -14.258 -1.154 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.468 6.468 11 N -0.423 5.423 12 C 0.023 3.977 13 C -0.183 4.183 14 H 0.121 0.879 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.222 4.222 18 C 0.242 3.758 19 O -0.301 6.301 20 H 0.078 0.922 21 H 0.217 0.783 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.279 -13.712 -0.852 14.390 hybrid contribution 0.854 0.706 -0.045 1.109 sum 5.134 -13.007 -0.897 14.012 Atomic orbital electron populations 1.70033 1.07073 1.27147 1.35600 1.25705 0.94588 1.00272 0.92608 0.86361 0.80311 0.81484 0.78614 1.19827 1.20480 1.18863 1.20904 0.94194 0.89591 1.53449 0.91374 1.18214 0.87089 0.82447 0.76326 1.90585 1.14092 1.86584 1.55533 1.46162 1.08954 1.05481 1.81732 1.20746 0.92857 0.83115 1.00970 1.22651 0.99580 0.97518 0.98534 0.87868 1.22310 0.99520 0.92487 1.00836 1.22416 1.00366 0.97665 0.95198 1.22913 1.03721 0.95879 0.99672 1.24914 0.76822 0.87812 0.86225 1.90441 1.30797 1.48367 1.60520 0.92207 0.78305 0.93299 0.92314 0.90274 0.90481 0.90459 0.90949 0.87943 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.78 11.85 55.55 0.66 -23.12 15 2 C 0.09 2.54 5.49 -17.37 -0.10 2.45 15 3 Si 0.91 20.91 29.56 -169.99 -5.03 15.88 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 6 H -0.26 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.54 -16.20 9.53 -35.63 -0.34 -16.54 15 8 H 0.07 1.89 7.85 -52.48 -0.41 1.48 15 9 C 0.56 16.61 7.74 -12.99 -0.10 16.51 15 10 O -0.58 -19.57 15.05 5.19 0.08 -19.49 15 11 N -0.77 -18.36 5.24 -61.71 -0.32 -18.68 15 12 C 0.15 2.89 4.93 -4.04 -0.02 2.87 15 13 C -0.16 -2.28 2.90 -90.74 -0.26 -2.54 15 14 H 0.10 1.37 8.14 -51.92 -0.42 0.95 15 15 C -0.11 -1.14 6.40 -25.02 -0.16 -1.30 15 16 C -0.12 -0.98 6.95 -24.69 -0.17 -1.15 15 17 C -0.18 -1.92 6.72 -26.32 -0.18 -2.09 15 18 C 0.37 5.48 7.07 -28.11 -0.20 5.28 15 19 O -0.43 -8.15 17.00 6.00 0.10 -8.05 15 20 H 0.27 7.46 8.29 -40.82 -0.34 7.12 15 21 H 0.38 8.60 7.64 -40.82 -0.31 8.29 15 22 H 0.05 1.01 8.14 -51.93 -0.42 0.58 15 23 H 0.06 1.16 8.14 -51.92 -0.42 0.74 15 24 H 0.08 0.80 7.85 -51.93 -0.41 0.40 15 25 H 0.08 0.67 8.14 -51.92 -0.42 0.25 15 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 15 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 15 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 LS Contribution 254.53 15.07 3.84 3.84 Total: -1.00 -36.41 254.53 -5.85 -42.26 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.65 Total: 3.89 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.53 Total: 3.48 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.34 Total: -41.80 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: 0.18 Total: -27.53 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -36.41 -5.85 -42.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307564542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.101 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds