Wall clock time and date at job start Mon Mar 30 2020 02:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47177 * 274.98488 * 3 2 1 5 5 H 1.48502 * 109.47127 * 34.97954 * 3 2 1 6 6 H 1.48493 * 109.47253 * 154.98126 * 3 2 1 7 7 C 1.40042 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00096 * 186.15113 * 7 2 1 9 9 C 1.46375 * 120.00170 * 6.15206 * 7 2 1 10 10 O 1.21695 * 119.99693 * 353.93877 * 9 7 2 11 11 N 1.34772 * 120.00131 * 173.94085 * 9 7 2 12 12 C 1.46501 * 119.99823 * 180.27515 * 11 9 7 13 13 C 1.53003 * 109.47352 * 179.72306 * 12 11 9 14 14 H 1.09008 * 109.96602 * 306.27256 * 13 12 11 15 15 C 1.54278 * 109.98696 * 185.00056 * 13 12 11 16 16 C 1.54978 * 103.75053 * 217.52606 * 15 13 12 17 17 C 1.54893 * 102.33325 * 37.08559 * 16 15 13 18 18 C 1.51441 * 109.98182 * 67.58104 * 13 12 11 19 19 O 1.20759 * 126.34416 * 298.97176 * 18 13 12 20 20 H 0.97000 * 120.00488 * 0.02562 * 1 2 3 21 21 H 0.96992 * 120.00439 * 359.97438 * 11 9 7 22 22 H 1.09002 * 109.47294 * 299.72437 * 12 11 9 23 23 H 1.09008 * 109.47412 * 59.72371 * 12 11 9 24 24 H 1.09002 * 110.57162 * 336.09659 * 15 13 12 25 25 H 1.09008 * 110.56704 * 98.95975 * 15 13 12 26 26 H 1.09001 * 110.83311 * 155.29557 * 16 15 13 27 27 H 1.09002 * 110.83502 * 278.87426 * 16 15 13 28 28 H 1.09000 * 110.44182 * 81.11173 * 17 16 15 29 29 H 1.08996 * 110.44128 * 203.50835 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4946 2.6200 0.8026 6 1 3.5868 1.4123 0.5921 7 6 2.0070 -1.2127 0.0005 8 1 3.0824 -1.2153 0.1008 9 6 1.2816 -2.4769 -0.1347 10 8 0.0646 -2.4828 -0.1367 11 7 1.9613 -3.6342 -0.2571 12 6 1.2353 -4.8987 -0.3985 13 6 2.2353 -6.0497 -0.5255 14 1 2.9383 -5.8446 -1.3330 15 6 1.4870 -7.3705 -0.8004 16 6 2.2879 -8.4227 0.0080 17 6 2.6811 -7.6327 1.2810 18 6 2.9830 -6.2319 0.7789 19 8 3.6888 -5.4146 1.3193 20 1 -0.4851 0.8400 -0.0004 21 1 2.9313 -3.6294 -0.2558 22 1 0.6079 -5.0576 0.4786 23 1 0.6098 -4.8608 -1.2905 24 1 0.4601 -7.3111 -0.4399 25 1 1.5075 -7.6080 -1.8641 26 1 1.6603 -9.2774 0.2605 27 1 3.1747 -8.7402 -0.5406 28 1 1.8519 -7.6132 1.9882 29 1 3.5647 -8.0720 1.7438 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307564542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:17 Heat of formation + Delta-G solvation = -120.886454 kcal Electronic energy + Delta-G solvation = -13764.314907 eV Core-core repulsion = 11264.519673 eV Total energy + Delta-G solvation = -2499.795234 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04112 -39.23743 -37.33252 -35.16546 -34.42629 -31.04565 -28.57220 -27.71772 -25.02638 -22.20098 -21.46609 -20.19494 -19.12592 -17.53914 -17.50306 -16.70751 -16.29115 -15.86192 -15.44065 -15.21066 -14.51929 -14.41265 -13.79500 -13.71051 -13.33645 -13.14928 -12.76900 -12.66685 -12.33737 -12.13518 -12.01775 -11.98560 -11.53193 -10.96241 -10.38995 -9.92090 -9.52084 -8.33683 -6.89352 0.93695 1.37333 1.38900 1.55230 2.23092 2.42511 3.01618 3.21450 3.50650 3.57058 3.88770 3.92610 4.25650 4.30619 4.40419 4.66613 4.74177 4.76235 4.92676 5.04857 5.19427 5.22628 5.28458 5.41427 5.83760 6.15734 6.22927 6.53256 6.82827 7.46714 8.43355 8.62816 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.060688 B = 0.006996 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.266874 B = 4001.557930 C = 4286.262277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.536 3.464 10 O -0.632 6.632 11 N -0.758 5.758 12 C 0.146 3.854 13 C -0.157 4.157 14 H 0.112 0.888 15 C -0.108 4.108 16 C -0.105 4.105 17 C -0.178 4.178 18 C 0.359 3.641 19 O -0.481 6.481 20 H 0.276 0.724 21 H 0.392 0.608 22 H 0.032 0.968 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -15.241 -1.532 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.614 4.614 8 H 0.099 0.901 9 C 0.340 3.660 10 O -0.520 6.520 11 N -0.413 5.413 12 C 0.021 3.979 13 C -0.177 4.177 14 H 0.130 0.870 15 C -0.146 4.146 16 C -0.142 4.142 17 C -0.215 4.215 18 C 0.237 3.763 19 O -0.356 6.356 20 H 0.086 0.914 21 H 0.226 0.774 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.580 -14.767 -1.244 15.835 hybrid contribution 0.427 0.942 0.068 1.036 sum 6.007 -13.825 -1.176 15.119 Atomic orbital electron populations 1.70178 1.09491 1.29081 1.36181 1.26991 0.95586 1.04942 0.91083 0.84975 0.78721 0.74949 0.79412 1.18340 1.19317 1.17634 1.21423 0.95032 0.90623 1.54351 0.90141 1.18603 0.86801 0.84339 0.76212 1.90532 1.15930 1.87687 1.57854 1.45913 1.09311 1.05878 1.80151 1.20910 0.94008 0.83137 0.99812 1.22690 0.98717 0.97329 0.98924 0.87036 1.22353 0.99143 0.90434 1.02664 1.22446 1.01110 0.97308 0.93371 1.22949 1.04672 0.92836 1.01069 1.25647 0.75310 0.89327 0.86065 1.90417 1.33036 1.50394 1.61729 0.91387 0.77419 0.94974 0.92950 0.90430 0.88366 0.87717 0.89300 0.87174 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.85 11.85 21.83 0.26 -51.59 15 2 C 0.03 1.70 5.49 85.30 0.47 2.17 15 3 Si 1.00 42.88 29.56 68.60 2.03 44.90 15 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 15 7 C -0.58 -35.10 9.53 24.83 0.24 -34.87 15 8 H 0.08 4.51 7.85 -2.91 -0.02 4.49 15 9 C 0.54 33.29 7.74 86.36 0.67 33.96 15 10 O -0.63 -44.22 15.05 -4.33 -0.07 -44.28 15 11 N -0.76 -37.45 5.24 -467.39 -2.45 -39.90 15 12 C 0.15 5.81 4.93 86.38 0.43 6.23 15 13 C -0.16 -4.24 2.90 -10.87 -0.03 -4.27 15 14 H 0.11 2.83 8.14 -2.38 -0.02 2.81 15 15 C -0.11 -1.88 6.40 31.70 0.20 -1.67 15 16 C -0.11 -1.30 6.95 31.92 0.22 -1.08 15 17 C -0.18 -3.23 6.72 30.86 0.21 -3.03 15 18 C 0.36 10.42 7.07 29.70 0.21 10.63 15 19 O -0.48 -18.48 17.00 -1.45 -0.02 -18.50 15 20 H 0.28 15.67 8.29 -92.71 -0.77 14.91 15 21 H 0.39 18.03 7.64 -92.71 -0.71 17.32 15 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.05 2.14 8.14 -2.38 -0.02 2.12 15 24 H 0.08 1.41 7.85 -2.39 -0.02 1.39 15 25 H 0.10 1.35 8.14 -2.38 -0.02 1.33 15 26 H 0.10 0.84 8.14 -2.39 -0.02 0.83 15 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 15 28 H 0.11 1.91 8.14 -2.39 -0.02 1.89 15 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 Total: -1.00 -82.76 254.53 2.80 -79.96 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.45 Total: 21.34 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 2.61 Total: 8.07 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -2.19 Total: -91.49 kcal Atomic # 8 Polarization: -62.70 SS G_CDS: -0.09 Total: -62.79 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -82.76 2.80 -79.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307564542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.930 kcal (2) G-P(sol) polarization free energy of solvation -82.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds