Wall clock time and date at job start Mon Mar 30 2020 02:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47502 * 270.00347 * 3 2 1 5 5 H 1.48498 * 109.47116 * 30.00463 * 3 2 1 6 6 H 1.48503 * 109.46936 * 149.99992 * 3 2 1 7 7 C 1.37878 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99591 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00446 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.09003 * 115.50646 * 325.30338 * 13 11 10 15 15 C 1.52996 * 117.43293 * 110.67407 * 13 11 10 16 16 H 1.09001 * 119.80918 * 355.36899 * 15 13 11 17 17 C 1.54534 * 118.02987 * 198.16717 * 15 13 11 18 18 O 1.44425 * 104.73134 * 273.04706 * 17 15 13 19 19 C 1.44422 * 105.27583 * 40.52574 * 18 17 15 20 20 C 1.52990 * 117.43172 * 179.97438 * 13 11 10 21 21 H 1.09002 * 119.81045 * 5.65536 * 20 13 11 22 22 H 0.97000 * 120.00464 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 24 24 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 25 25 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 26 26 H 1.09001 * 110.39660 * 154.24906 * 17 15 13 27 27 H 1.09007 * 110.51478 * 31.90488 * 17 15 13 28 28 H 1.09004 * 110.37651 * 200.66229 * 19 18 17 29 29 H 1.08998 * 110.37266 * 78.32199 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1131 -1.8995 -0.0014 13 6 5.8274 -4.2423 -0.0071 14 1 5.2208 -4.9570 0.5491 15 6 6.5155 -4.7411 -1.2792 16 1 6.5579 -4.0996 -2.1595 17 6 6.6513 -6.2672 -1.4807 18 8 7.8796 -6.6187 -0.8073 19 6 7.8830 -5.8399 0.4090 20 6 7.3426 -4.4541 -0.0073 21 1 8.0095 -3.5975 0.0901 22 1 -0.4851 0.8400 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 3.3696 -3.3125 -0.0002 26 1 6.7190 -6.5057 -2.5422 27 1 5.8079 -6.7888 -1.0283 28 1 8.8968 -5.7500 0.7992 29 1 7.2283 -6.2944 1.1524 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307621176.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:00 Heat of formation + Delta-G solvation = -54.050249 kcal Electronic energy + Delta-G solvation = -13523.554369 eV Core-core repulsion = 11026.657371 eV Total energy + Delta-G solvation = -2496.896998 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.62341 -38.53592 -34.72906 -34.22479 -32.38491 -28.86936 -28.39148 -25.87384 -22.86448 -21.29244 -20.73250 -19.82940 -17.77162 -16.57026 -15.88178 -15.65898 -15.28656 -15.00491 -14.41035 -14.20146 -13.27675 -12.96673 -12.81448 -12.43040 -12.20078 -11.82126 -11.63430 -11.08949 -10.82082 -10.46046 -10.29462 -10.01130 -9.79964 -9.54475 -9.32808 -8.82238 -8.23434 -6.25231 -4.28022 2.73559 3.23675 3.30510 3.38649 3.54515 3.76294 3.88025 4.29792 4.53533 4.62760 4.77736 4.82584 5.03423 5.09932 5.19510 5.35088 5.51120 5.54603 5.64344 5.93232 6.05470 6.51928 6.74378 7.00832 7.14003 7.33044 8.07372 8.44699 8.69686 8.84118 9.34367 10.86642 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.070441 B = 0.006100 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.398135 B = 4589.154571 C = 4817.234684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.697 5.697 11 C 0.529 3.471 12 O -0.556 6.556 13 C -0.144 4.144 14 H 0.121 0.879 15 C -0.169 4.169 16 H 0.127 0.873 17 C 0.075 3.925 18 O -0.375 6.375 19 C 0.073 3.927 20 C -0.164 4.164 21 H 0.134 0.866 22 H 0.268 0.732 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.398 0.602 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.467 -11.027 -0.610 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.345 5.345 11 C 0.313 3.687 12 O -0.435 6.435 13 C -0.165 4.165 14 H 0.139 0.861 15 C -0.188 4.188 16 H 0.145 0.855 17 C -0.002 4.002 18 O -0.293 6.293 19 C -0.003 4.003 20 C -0.183 4.183 21 H 0.152 0.848 22 H 0.078 0.922 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.232 0.768 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.993 -10.377 -0.683 15.874 hybrid contribution -0.304 0.814 0.068 0.871 sum 11.689 -9.563 -0.616 15.115 Atomic orbital electron populations 1.69875 1.06211 1.27492 1.49271 1.24795 0.94800 0.99185 0.93812 0.86812 0.80562 0.83216 0.79074 1.19822 1.20827 1.18526 1.21079 0.88420 0.95292 1.53512 0.90187 1.19531 0.95358 0.78462 0.96875 1.46117 1.05415 1.11211 1.71749 1.19425 0.83255 0.88712 0.77304 1.90655 1.55755 1.45791 1.51316 1.22463 0.95570 0.96901 1.01557 0.86077 1.24152 1.04532 0.97366 0.92785 0.85512 1.22954 0.87368 0.91082 0.98797 1.89168 1.40509 1.65074 1.34591 1.22949 1.02101 0.87810 0.87459 1.24132 0.92843 1.00208 1.01089 0.84830 0.92199 0.95583 0.96079 0.76784 0.88194 0.91589 0.88222 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.54 15 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 15 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 15 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 15 7 C -0.55 -14.86 9.83 -34.44 -0.34 -15.20 15 8 H 0.08 2.26 7.84 -52.48 -0.41 1.85 15 9 C 0.22 5.38 4.50 -5.20 -0.02 5.36 15 10 N -0.70 -14.03 5.55 -61.47 -0.34 -14.37 15 11 C 0.53 10.02 7.61 -10.98 -0.08 9.94 15 12 O -0.56 -12.60 16.34 5.55 0.09 -12.51 15 13 C -0.14 -1.98 5.74 -91.78 -0.53 -2.51 15 14 H 0.12 1.38 8.14 -51.93 -0.42 0.96 15 15 C -0.17 -2.09 6.91 -89.08 -0.62 -2.71 15 16 H 0.13 1.63 8.14 -51.93 -0.42 1.21 15 17 C 0.07 0.77 7.44 37.96 0.28 1.05 15 18 O -0.37 -4.49 11.65 -35.23 -0.41 -4.90 15 19 C 0.07 0.77 7.44 37.92 0.28 1.05 15 20 C -0.16 -2.09 6.64 -89.12 -0.59 -2.68 15 21 H 0.13 1.86 7.82 -51.93 -0.41 1.45 15 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 23 H 0.03 0.67 7.20 -51.93 -0.37 0.30 15 24 H 0.02 0.54 7.57 -51.93 -0.39 0.15 15 25 H 0.40 7.01 8.32 -40.82 -0.34 6.67 15 26 H 0.10 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 15 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 LS Contribution 253.21 15.07 3.82 3.82 Total: -1.00 -31.88 253.21 -6.08 -37.96 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.63 Total: 2.50 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.71 Total: -3.61 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.43 Total: -39.91 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.32 Total: -17.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.88 -6.08 -37.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307621176.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.095 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds