Wall clock time and date at job start Mon Mar 30 2020 02:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47502 * 270.00347 * 3 2 1 5 5 H 1.48498 * 109.47116 * 30.00463 * 3 2 1 6 6 H 1.48503 * 109.46936 * 149.99992 * 3 2 1 7 7 C 1.37878 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99591 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00446 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.09003 * 115.50646 * 325.30338 * 13 11 10 15 15 C 1.52996 * 117.43293 * 110.67407 * 13 11 10 16 16 H 1.09001 * 119.80918 * 355.36899 * 15 13 11 17 17 C 1.54534 * 118.02987 * 198.16717 * 15 13 11 18 18 O 1.44425 * 104.73134 * 273.04706 * 17 15 13 19 19 C 1.44422 * 105.27583 * 40.52574 * 18 17 15 20 20 C 1.52990 * 117.43172 * 179.97438 * 13 11 10 21 21 H 1.09002 * 119.81045 * 5.65536 * 20 13 11 22 22 H 0.97000 * 120.00464 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 24 24 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 25 25 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 26 26 H 1.09001 * 110.39660 * 154.24906 * 17 15 13 27 27 H 1.09007 * 110.51478 * 31.90488 * 17 15 13 28 28 H 1.09004 * 110.37651 * 200.66229 * 19 18 17 29 29 H 1.08998 * 110.37266 * 78.32199 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1131 -1.8995 -0.0014 13 6 5.8274 -4.2423 -0.0071 14 1 5.2208 -4.9570 0.5491 15 6 6.5155 -4.7411 -1.2792 16 1 6.5579 -4.0996 -2.1595 17 6 6.6513 -6.2672 -1.4807 18 8 7.8796 -6.6187 -0.8073 19 6 7.8830 -5.8399 0.4090 20 6 7.3426 -4.4541 -0.0073 21 1 8.0095 -3.5975 0.0901 22 1 -0.4851 0.8400 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 3.3696 -3.3125 -0.0002 26 1 6.7190 -6.5057 -2.5422 27 1 5.8079 -6.7888 -1.0283 28 1 8.8968 -5.7500 0.7992 29 1 7.2283 -6.2944 1.1524 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307621176.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:00 Heat of formation + Delta-G solvation = -77.976700 kcal Electronic energy + Delta-G solvation = -13524.591898 eV Core-core repulsion = 11026.657371 eV Total energy + Delta-G solvation = -2497.934527 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.70473 -39.95806 -36.30170 -35.52825 -34.43466 -30.30185 -29.67426 -27.09707 -24.43747 -22.75661 -21.69272 -21.30310 -19.37281 -18.21469 -17.22937 -16.92504 -16.52901 -16.12910 -16.01598 -15.78549 -14.92854 -14.44479 -14.28081 -13.94866 -13.52707 -13.12400 -12.84542 -12.74344 -12.52861 -11.96038 -11.69672 -11.44421 -11.31912 -10.94748 -10.89705 -10.64104 -10.01399 -8.42405 -6.49933 1.30598 1.33463 1.37615 1.45751 2.20677 2.26385 2.54771 2.92871 3.05203 3.48829 3.55266 3.78739 3.87239 4.10405 4.15316 4.42263 4.64699 4.77226 4.79107 4.82743 4.97394 4.98334 5.06283 5.22268 5.44022 5.72174 6.04830 6.50676 6.75895 7.11567 7.31204 8.72251 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.070441 B = 0.006100 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.398135 B = 4589.154571 C = 4817.234684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.231 3.769 10 N -0.697 5.697 11 C 0.527 3.473 12 O -0.596 6.596 13 C -0.145 4.145 14 H 0.152 0.848 15 C -0.164 4.164 16 H 0.117 0.883 17 C 0.078 3.922 18 O -0.389 6.389 19 C 0.078 3.922 20 C -0.167 4.167 21 H 0.116 0.884 22 H 0.273 0.727 23 H 0.014 0.986 24 H 0.012 0.988 25 H 0.411 0.589 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 -12.116 -0.592 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.107 3.893 10 N -0.346 5.346 11 C 0.315 3.685 12 O -0.478 6.478 13 C -0.166 4.166 14 H 0.170 0.830 15 C -0.183 4.183 16 H 0.135 0.865 17 C 0.002 3.998 18 O -0.308 6.308 19 C 0.002 3.998 20 C -0.186 4.186 21 H 0.134 0.866 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.247 0.753 26 H 0.134 0.866 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.015 -11.503 -0.667 17.383 hybrid contribution -0.623 1.107 0.049 1.271 sum 12.392 -10.396 -0.618 16.187 Atomic orbital electron populations 1.69974 1.07668 1.28687 1.50511 1.25595 0.95548 1.02665 0.93529 0.85859 0.79227 0.79350 0.79463 1.18987 1.19697 1.18552 1.21275 0.89813 0.94689 1.52839 0.92112 1.19136 0.93522 0.80889 0.95754 1.45964 1.06507 1.09896 1.72226 1.20238 0.82162 0.90675 0.75475 1.90631 1.56534 1.47810 1.52853 1.22344 0.96736 0.93813 1.03667 0.83045 1.24258 1.03137 0.98991 0.91941 0.86480 1.23093 0.87534 0.89131 1.00030 1.89163 1.41302 1.65141 1.35228 1.23057 1.03374 0.85995 0.87362 1.24198 0.91715 1.01108 1.01532 0.86574 0.91768 0.96835 0.97025 0.75309 0.86560 0.89647 0.86714 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.96 21.45 0.30 -54.94 15 2 C 0.03 1.53 5.47 84.66 0.46 1.99 15 3 Si 0.94 43.88 27.47 68.60 1.88 45.77 15 4 H -0.26 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 6 H -0.26 -12.15 6.54 99.48 0.65 -11.50 15 7 C -0.55 -30.13 9.83 25.60 0.25 -29.88 15 8 H 0.06 3.49 7.84 -2.91 -0.02 3.47 15 9 C 0.23 11.31 4.50 85.63 0.38 11.69 15 10 N -0.70 -27.73 5.55 -466.79 -2.59 -30.32 15 11 C 0.53 19.63 7.61 87.66 0.67 20.30 15 12 O -0.60 -27.10 16.34 -3.04 -0.05 -27.15 15 13 C -0.14 -3.70 5.74 -11.54 -0.07 -3.77 15 14 H 0.15 2.94 8.14 -2.39 -0.02 2.92 15 15 C -0.16 -3.72 6.91 -9.79 -0.07 -3.79 15 16 H 0.12 2.88 8.14 -2.39 -0.02 2.86 15 17 C 0.08 1.35 7.44 72.50 0.54 1.89 15 18 O -0.39 -8.08 11.65 -148.98 -1.74 -9.82 15 19 C 0.08 1.40 7.44 72.48 0.54 1.94 15 20 C -0.17 -3.93 6.64 -9.82 -0.07 -4.00 15 21 H 0.12 3.17 7.82 -2.39 -0.02 3.15 15 22 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 23 H 0.01 0.71 7.20 -2.39 -0.02 0.69 15 24 H 0.01 0.60 7.57 -2.39 -0.02 0.58 15 25 H 0.41 14.14 8.32 -92.71 -0.77 13.37 15 26 H 0.12 1.64 8.14 -2.39 -0.02 1.62 15 27 H 0.09 1.19 8.14 -2.38 -0.02 1.17 15 28 H 0.11 1.69 8.14 -2.39 -0.02 1.67 15 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 15 Total: -1.00 -68.13 253.21 0.78 -67.34 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.33 Total: 12.73 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 2.65 Total: -3.61 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.29 Total: -85.25 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.79 Total: -36.97 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -68.13 0.78 -67.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307621176.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.634 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds