Wall clock time and date at job start Mon Mar 30 2020 03:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99611 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00327 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99743 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46828 * 90.00241 * 11 9 7 13 13 H 1.48494 * 109.47178 * 209.99936 * 11 9 7 14 14 H 1.48500 * 109.47075 * 330.00183 * 11 9 7 15 15 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 16 16 N 1.34501 * 126.28558 * 104.70990 * 15 2 1 17 17 C 1.31136 * 105.61209 * 179.90467 * 16 15 2 18 18 O 1.33642 * 106.89660 * 0.35908 * 17 16 15 19 19 N 1.21294 * 109.81538 * 359.76296 * 18 17 16 20 20 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 22 22 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 23 23 H 1.00898 * 110.99995 * 38.95403 * 4 2 1 24 24 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 25 25 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 26 26 H 1.09001 * 109.47194 * 299.99524 * 6 5 4 27 27 H 1.08992 * 109.47399 * 59.99697 * 6 5 4 28 28 H 0.97000 * 120.00354 * 180.02562 * 10 9 7 29 29 H 1.07995 * 126.54741 * 180.12337 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 2.6598 0.4059 4.7515 8 1 2.3639 1.4381 4.6357 9 6 3.0959 -0.0531 5.9763 10 7 3.4558 -1.3102 6.1174 11 14 3.1756 1.1106 7.4354 12 1 1.8817 1.0807 8.1636 13 1 4.2671 0.6859 8.3482 14 1 3.4412 2.4901 6.9544 15 6 2.0323 -0.7104 -1.2304 16 7 2.5572 -0.1317 -2.3251 17 6 2.8574 -1.1176 -3.1360 18 8 2.5026 -2.2491 -2.5197 19 7 2.0327 -1.9944 -1.4309 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.4495 -1.4979 1.4101 24 1 1.0869 0.6164 2.5525 25 1 2.7587 1.0463 2.1182 26 1 1.9201 -1.3566 3.8031 27 1 3.5915 -0.9261 3.3683 28 1 3.7622 -1.6332 6.9791 29 1 3.3023 -1.0313 -4.1163 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308272254.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:20 Heat of formation + Delta-G solvation = 60.584559 kcal Electronic energy + Delta-G solvation = -13441.234206 eV Core-core repulsion = 10981.600897 eV Total energy + Delta-G solvation = -2459.633309 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.52430 -37.40444 -35.35129 -33.35844 -32.11448 -30.63943 -27.92444 -25.06074 -24.05881 -23.75516 -21.02916 -20.66362 -18.01783 -17.78826 -16.38641 -15.65431 -15.25168 -14.46664 -14.36752 -14.18460 -12.93298 -12.66138 -12.44523 -12.33761 -11.83197 -11.63703 -11.33415 -11.10975 -10.96119 -10.94016 -10.56457 -10.10537 -9.99657 -9.42866 -9.16202 -8.36679 -7.97206 -6.00150 -4.03218 1.28058 2.33636 3.06773 3.31942 3.38157 3.41454 3.68398 4.24629 4.44199 4.76479 5.01897 5.15678 5.33029 5.35785 5.62446 5.77297 5.81652 5.99623 6.15005 6.27123 6.35838 6.91836 7.34322 7.68725 7.75141 7.88755 8.05583 8.28439 8.41018 9.03879 9.60618 11.11272 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.064515 B = 0.005479 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.901867 B = 5109.356773 C = 5266.906614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.170 3.830 3 H 0.105 0.895 4 N -0.683 5.683 5 C 0.068 3.932 6 C 0.025 3.975 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.190 3.810 16 N -0.486 5.486 17 C 0.146 3.854 18 O 0.073 5.927 19 N -0.367 5.367 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.345 0.655 24 H 0.022 0.978 25 H 0.061 0.939 26 H 0.015 0.985 27 H 0.025 0.975 28 H 0.261 0.739 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 0.970 -17.073 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.057 3.943 3 H 0.123 0.877 4 N -0.315 5.315 5 C -0.060 4.060 6 C -0.012 4.012 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.084 4.084 16 N -0.219 5.219 17 C -0.095 4.095 18 O 0.014 5.986 19 N -0.073 5.073 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.164 0.836 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -3.304 0.777 -16.361 16.710 hybrid contribution -0.624 0.654 0.704 1.146 sum -3.928 1.431 -15.657 16.205 Atomic orbital electron populations 1.22470 0.95279 1.02828 1.02988 1.19729 0.92713 0.96937 0.84904 0.87656 1.60471 1.56734 1.10507 1.03763 1.22245 0.98637 0.95122 0.90001 1.19071 0.97102 0.95364 0.89692 1.21154 1.44139 0.96398 0.94436 0.92653 1.25009 0.95333 0.95129 0.98905 1.69973 1.44328 1.14401 1.24457 0.86572 0.77661 0.81157 0.82469 1.20686 1.21189 1.19856 1.25945 0.98783 0.86844 0.96783 1.71839 1.16163 1.31470 1.02423 1.30398 0.97958 0.79761 1.01391 1.85323 1.56058 1.35553 1.21627 1.74630 1.16626 1.18079 0.97994 0.91997 0.90733 0.92074 0.83634 0.95996 0.92021 0.96673 0.95624 0.92951 0.72532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.14 37.15 0.34 -1.98 15 2 C 0.17 2.66 3.13 -68.87 -0.22 2.44 15 3 H 0.11 1.64 7.80 -51.93 -0.40 1.23 15 4 N -0.68 -12.79 6.23 -107.95 -0.67 -13.47 15 5 C 0.07 1.42 5.42 -3.82 -0.02 1.40 15 6 C 0.03 0.66 5.23 -27.88 -0.15 0.52 15 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 10 N -0.89 -27.18 13.29 55.43 0.74 -26.45 15 11 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 15 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 15 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 15 C 0.19 2.96 7.06 -156.36 -1.10 1.85 15 16 N -0.49 -6.62 11.55 -13.72 -0.16 -6.77 15 17 C 0.15 1.38 13.40 51.99 0.70 2.08 15 18 O 0.07 0.90 11.31 18.10 0.20 1.10 15 19 N -0.37 -5.72 12.15 30.88 0.38 -5.35 15 20 H 0.06 0.82 8.13 -51.93 -0.42 0.40 15 21 H 0.07 0.97 7.45 -51.93 -0.39 0.59 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 23 H 0.34 6.40 8.47 -39.29 -0.33 6.06 15 24 H 0.02 0.44 7.44 -51.93 -0.39 0.05 15 25 H 0.06 1.30 8.06 -51.93 -0.42 0.88 15 26 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 15 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 29 H 0.26 0.76 8.06 -52.49 -0.42 0.33 15 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -33.08 259.22 -5.07 -38.15 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.58 Total: -0.56 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.86 Total: -7.33 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.28 Total: -52.03 kcal Atomic # 8 Polarization: 0.90 SS G_CDS: 0.20 Total: 1.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.08 -5.07 -38.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308272254.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.736 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds