Wall clock time and date at job start Mon Mar 30 2020 03:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99611 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00327 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99743 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46828 * 90.00241 * 11 9 7 13 13 H 1.48494 * 109.47178 * 209.99936 * 11 9 7 14 14 H 1.48500 * 109.47075 * 330.00183 * 11 9 7 15 15 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 16 16 N 1.34501 * 126.28558 * 104.70990 * 15 2 1 17 17 C 1.31136 * 105.61209 * 179.90467 * 16 15 2 18 18 O 1.33642 * 106.89660 * 0.35908 * 17 16 15 19 19 N 1.21294 * 109.81538 * 359.76296 * 18 17 16 20 20 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 22 22 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 23 23 H 1.00898 * 110.99995 * 38.95403 * 4 2 1 24 24 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 25 25 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 26 26 H 1.09001 * 109.47194 * 299.99524 * 6 5 4 27 27 H 1.08992 * 109.47399 * 59.99697 * 6 5 4 28 28 H 0.97000 * 120.00354 * 180.02562 * 10 9 7 29 29 H 1.07995 * 126.54741 * 180.12337 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 2.6598 0.4059 4.7515 8 1 2.3639 1.4381 4.6357 9 6 3.0959 -0.0531 5.9763 10 7 3.4558 -1.3102 6.1174 11 14 3.1756 1.1106 7.4354 12 1 1.8817 1.0807 8.1636 13 1 4.2671 0.6859 8.3482 14 1 3.4412 2.4901 6.9544 15 6 2.0323 -0.7104 -1.2304 16 7 2.5572 -0.1317 -2.3251 17 6 2.8574 -1.1176 -3.1360 18 8 2.5026 -2.2491 -2.5197 19 7 2.0327 -1.9944 -1.4309 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.4495 -1.4979 1.4101 24 1 1.0869 0.6164 2.5525 25 1 2.7587 1.0463 2.1182 26 1 1.9201 -1.3566 3.8031 27 1 3.5915 -0.9261 3.3683 28 1 3.7622 -1.6332 6.9791 29 1 3.3023 -1.0313 -4.1163 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308272254.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:20 Heat of formation + Delta-G solvation = 34.176363 kcal Electronic energy + Delta-G solvation = -13442.379351 eV Core-core repulsion = 10981.600897 eV Total energy + Delta-G solvation = -2460.778454 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -46.54179 -38.73899 -36.54625 -35.26527 -33.48945 -32.13819 -29.61519 -26.48958 -25.44058 -25.00439 -22.57075 -22.13964 -19.05707 -18.81089 -18.51974 -16.82670 -16.63984 -16.33806 -15.79389 -15.50545 -14.39777 -14.28884 -14.09591 -13.45829 -13.26273 -13.06895 -12.86807 -12.66454 -12.44736 -12.38021 -12.04520 -11.99112 -11.49165 -11.33091 -10.97912 -10.58277 -9.46741 -8.21448 -6.33498 0.40207 1.30714 1.40309 1.42159 1.53358 2.29616 2.39725 2.70310 3.12180 3.14701 3.53010 3.95367 4.01055 4.30974 4.44975 4.53758 4.68550 4.73567 4.83944 4.98958 5.04419 5.18196 5.41563 5.61929 5.74012 6.02682 6.17069 6.36457 6.83681 7.34178 7.36094 8.90963 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.064515 B = 0.005479 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.901867 B = 5109.356773 C = 5266.906614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.170 3.830 3 H 0.105 0.895 4 N -0.694 5.694 5 C 0.087 3.913 6 C 0.031 3.969 7 C -0.544 4.544 8 H 0.065 0.935 9 C -0.001 4.001 10 N -0.933 5.933 11 Si 0.970 3.030 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.261 1.261 15 C 0.171 3.829 16 N -0.517 5.517 17 C 0.178 3.822 18 O 0.075 5.925 19 N -0.397 5.397 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.343 0.657 24 H 0.035 0.965 25 H 0.062 0.938 26 H -0.008 1.008 27 H -0.010 1.010 28 H 0.264 0.736 29 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.927 2.198 -18.174 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.123 0.877 4 N -0.325 5.325 5 C -0.041 4.041 6 C -0.006 4.006 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.199 4.199 10 N -0.573 5.573 11 Si 0.794 3.206 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.186 1.186 15 C -0.102 4.102 16 N -0.250 5.250 17 C -0.062 4.062 18 O 0.015 5.985 19 N -0.104 5.104 20 H 0.077 0.923 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.162 0.838 24 H 0.053 0.947 25 H 0.080 0.920 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.073 0.927 29 H 0.335 0.665 Dipole moment (debyes) X Y Z Total from point charges -3.533 2.022 -17.489 17.957 hybrid contribution -0.504 0.215 0.895 1.049 sum -4.038 2.237 -16.595 17.225 Atomic orbital electron populations 1.22364 0.93404 1.02910 1.03860 1.19735 0.94246 0.96512 0.83728 0.87712 1.60335 1.57787 1.10383 1.04023 1.21844 0.98884 0.94509 0.88843 1.18919 0.94751 0.94963 0.91983 1.21604 1.44113 0.97123 0.95376 0.91696 1.26020 0.94692 0.96888 1.02322 1.70119 1.45200 1.16566 1.25433 0.85381 0.77973 0.79039 0.78240 1.19605 1.20862 1.18557 1.25892 0.99844 0.87128 0.97379 1.71820 1.17656 1.32840 1.02707 1.31673 0.94743 0.77743 1.02008 1.85274 1.55912 1.36378 1.20904 1.74626 1.17884 1.18341 0.99572 0.92292 0.90616 0.90323 0.83806 0.94717 0.91984 0.98999 0.99178 0.92743 0.66518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 9.14 71.98 0.66 -3.56 15 2 C 0.17 5.24 3.13 44.16 0.14 5.38 15 3 H 0.10 3.20 7.80 -2.39 -0.02 3.18 15 4 N -0.69 -26.32 6.23 -495.44 -3.09 -29.40 15 5 C 0.09 3.71 5.42 86.30 0.47 4.18 15 6 C 0.03 1.71 5.23 29.85 0.16 1.87 15 7 C -0.54 -31.31 9.11 25.60 0.23 -31.08 15 8 H 0.06 3.53 7.74 -2.91 -0.02 3.51 15 9 C 0.00 -0.08 5.46 84.66 0.46 0.38 15 10 N -0.93 -57.95 13.29 21.45 0.28 -57.66 15 11 Si 0.97 44.58 29.54 68.60 2.03 46.61 15 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 14 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 15 C 0.17 5.17 7.06 138.46 0.98 6.15 15 16 N -0.52 -13.11 11.55 -315.37 -3.64 -16.76 15 17 C 0.18 2.80 13.40 130.51 1.75 4.55 15 18 O 0.07 1.70 11.31 74.85 0.85 2.54 15 19 N -0.40 -12.10 12.15 -60.39 -0.73 -12.83 15 20 H 0.06 1.53 8.13 -2.39 -0.02 1.51 15 21 H 0.07 1.89 7.45 -2.39 -0.02 1.87 15 22 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.34 13.07 8.47 -89.70 -0.76 12.31 15 24 H 0.03 1.38 7.44 -2.39 -0.02 1.36 15 25 H 0.06 2.62 8.06 -2.39 -0.02 2.60 15 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 15 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 15 29 H 0.32 0.19 8.06 -2.91 -0.02 0.17 15 Total: -1.00 -72.98 259.22 0.93 -72.05 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.39 Total: 7.59 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.84 Total: -12.12 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -7.18 Total: -116.66 kcal Atomic # 8 Polarization: 1.70 SS G_CDS: 0.85 Total: 2.54 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.98 0.93 -72.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308272254.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.223 kcal (2) G-P(sol) polarization free energy of solvation -72.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds