Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47096 * 90.00181 * 8 6 4 10 10 H 1.48503 * 109.46922 * 209.99323 * 8 6 4 11 11 H 1.48497 * 109.47548 * 329.99869 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 2 15 15 N 1.30884 * 125.89129 * 275.02179 * 14 13 12 16 16 C 1.33660 * 109.76823 * 179.97438 * 15 14 13 17 17 N 1.39610 * 125.60802 * 179.97438 * 16 15 14 18 18 N 1.31194 * 108.77733 * 0.02562 * 16 15 14 19 19 N 1.34339 * 125.89536 * 94.71106 * 14 13 12 20 20 H 0.97002 * 126.75866 * 0.03992 * 19 14 13 21 21 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 22 22 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 23 23 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 25 25 H 1.00908 * 110.99583 * 38.95067 * 12 2 1 26 26 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 27 27 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 28 28 H 0.96990 * 120.00258 * 0.02562 * 17 16 15 29 29 H 0.97003 * 119.99349 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3426 -2.1618 -4.4118 10 1 2.4865 -0.1415 -5.1122 11 1 3.6292 -1.7585 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5873 -0.5218 3.5561 15 7 1.8590 -1.2331 4.3786 16 6 2.6342 -1.7515 5.3361 17 7 2.1978 -2.5636 6.3845 18 7 3.8725 -1.3706 5.1292 19 7 3.8635 -0.5746 3.9723 20 1 4.6278 -0.1452 3.5571 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7081 1.1608 -3.4844 25 1 1.4494 -1.4979 1.4101 26 1 2.7588 1.0462 2.1182 27 1 1.0870 0.6163 2.5526 28 1 1.2591 -2.7953 6.4600 29 1 2.8337 -2.8968 7.0368 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308272278.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = 88.768889 kcal Electronic energy + Delta-G solvation = -13525.833150 eV Core-core repulsion = 11099.714756 eV Total energy + Delta-G solvation = -2426.118394 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.113 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.73364 -36.27080 -34.61188 -32.76355 -31.58310 -30.33085 -28.29342 -25.30017 -24.73662 -21.67726 -20.52004 -20.23000 -17.95333 -16.64104 -16.00795 -15.55464 -15.46960 -14.74792 -14.25705 -13.83293 -13.35728 -12.54761 -11.84598 -11.68287 -11.57232 -11.21391 -10.95758 -10.80756 -10.56889 -10.19632 -10.00862 -9.74774 -9.54058 -9.08430 -8.40356 -8.21034 -7.42745 -6.02870 -4.06419 1.94414 2.80449 3.31135 3.31288 3.37717 3.42361 3.58633 4.41442 4.69919 5.10809 5.29106 5.37873 5.79855 5.93701 6.14523 6.53886 6.64791 6.82021 7.01877 7.22545 7.25090 7.45233 7.56304 7.70033 7.80996 8.17111 8.38557 8.49715 8.57224 9.00292 9.59047 11.04121 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.057699 B = 0.006154 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.157409 B = 4548.900749 C = 4699.477775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.678 5.678 13 C 0.129 3.871 14 C 0.332 3.668 15 N -0.573 5.573 16 C 0.471 3.529 17 N -0.828 5.828 18 N -0.380 5.380 19 N -0.473 5.473 20 H 0.441 0.559 21 H 0.008 0.992 22 H 0.090 0.910 23 H 0.030 0.970 24 H 0.260 0.740 25 H 0.336 0.664 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.412 0.588 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -1.947 12.131 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.003 4.003 14 C 0.052 3.948 15 N -0.310 5.310 16 C 0.099 3.901 17 N -0.385 5.385 18 N -0.221 5.221 19 N -0.191 5.191 20 H 0.287 0.713 21 H 0.027 0.973 22 H 0.109 0.891 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.153 0.847 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.243 0.757 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.751 -1.959 12.205 12.663 hybrid contribution -0.385 -0.250 -0.735 0.867 sum 2.365 -2.209 11.470 11.918 Atomic orbital electron populations 1.22443 1.00269 0.99566 1.00732 1.19231 0.89974 0.94469 0.85800 0.94486 1.21112 1.30491 1.12553 0.89428 0.91876 1.24938 0.95277 0.95171 0.99047 1.69877 1.37135 1.23114 1.23475 0.86488 0.79249 0.79240 0.82353 1.20792 1.21355 1.19892 1.60948 1.58905 1.08893 1.02206 1.20511 1.00351 0.94249 0.85197 1.24333 0.81723 0.93565 0.95148 1.70208 1.34062 1.19325 1.07370 1.20448 0.87353 0.92415 0.89871 1.40879 1.12220 1.56981 1.28424 1.78043 1.17970 1.20439 1.05605 1.47515 1.09341 1.40898 1.21374 0.71299 0.97294 0.89094 0.95107 0.92977 0.84672 0.89161 0.92045 0.75735 0.76015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.94 37.15 0.33 -3.63 15 2 C 0.21 5.08 2.57 -68.87 -0.18 4.90 15 3 H 0.04 0.94 7.80 -51.93 -0.40 0.54 15 4 C -0.50 -13.35 8.84 -34.44 -0.30 -13.66 15 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 15 7 N -0.90 -24.94 11.32 55.43 0.63 -24.32 15 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 12 N -0.68 -13.78 6.22 -109.22 -0.68 -14.45 15 13 C 0.13 2.17 6.11 -4.98 -0.03 2.14 15 14 C 0.33 5.48 7.74 -155.73 -1.21 4.28 15 15 N -0.57 -9.93 11.21 -11.13 -0.12 -10.05 15 16 C 0.47 7.48 9.44 -321.17 -3.03 4.44 15 17 N -0.83 -9.24 9.13 30.00 0.27 -8.97 15 18 N -0.38 -6.18 12.82 29.99 0.38 -5.79 15 19 N -0.47 -7.14 7.43 32.62 0.24 -6.90 15 20 H 0.44 5.37 8.96 -182.34 -1.63 3.74 15 21 H 0.01 0.17 7.45 -51.93 -0.39 -0.22 15 22 H 0.09 2.34 6.07 -51.93 -0.32 2.03 15 23 H 0.03 0.69 8.13 -51.93 -0.42 0.27 15 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 25 H 0.34 6.91 8.46 -39.29 -0.33 6.58 15 26 H 0.09 1.37 8.06 -51.93 -0.42 0.95 15 27 H 0.06 1.03 7.44 -51.93 -0.39 0.64 15 28 H 0.41 3.85 8.96 -40.82 -0.37 3.49 15 29 H 0.41 3.57 8.96 -40.82 -0.37 3.21 15 LS Contribution 254.34 15.07 3.83 3.83 Total: -1.00 -30.46 254.34 -9.55 -40.02 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.58 Total: 10.62 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -4.51 Total: -0.10 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: 0.72 Total: -70.49 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.46 -9.55 -40.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308272278.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.785 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds