Wall clock time and date at job start Mon Mar 30 2020 03:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 N 1.30885 * 125.89643 * 275.02412 * 14 13 12 16 16 C 1.33649 * 109.77075 * 179.97438 * 15 14 13 17 17 N 1.39610 * 125.60841 * 179.97438 * 16 15 14 18 18 N 1.31199 * 108.77884 * 359.97438 * 16 15 14 19 19 N 1.34341 * 125.89184 * 94.71310 * 14 13 12 20 20 H 0.96998 * 126.76435 * 0.03892 * 19 14 13 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 25 25 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 26 26 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 27 27 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 28 28 H 0.96996 * 120.00176 * 359.97438 * 17 16 15 29 29 H 0.97002 * 119.99715 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8074 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 7 3.8449 -0.7228 -3.8627 16 6 3.9264 -1.4195 -5.0003 17 7 5.1088 -1.8155 -5.6280 18 7 2.7123 -1.6701 -5.4299 19 7 1.8279 -1.0981 -4.5011 20 1 0.8587 -1.1145 -4.5363 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7082 1.1609 3.4844 25 1 1.4496 -1.4980 -1.4101 26 1 1.0871 0.6162 -2.5525 27 1 2.7589 1.0461 -2.1182 28 1 5.9661 -1.5847 -5.2374 29 1 5.0730 -2.3214 -6.4549 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308272279.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:17 Heat of formation + Delta-G solvation = 91.087594 kcal Electronic energy + Delta-G solvation = -13525.625559 eV Core-core repulsion = 11099.607712 eV Total energy + Delta-G solvation = -2426.017847 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.73956 -36.31253 -34.60358 -32.74681 -31.60824 -30.33307 -28.31852 -25.32852 -24.76142 -21.64573 -20.53473 -20.31211 -17.92023 -16.63078 -16.03198 -15.54752 -15.47347 -14.77886 -14.47122 -13.64899 -13.19132 -12.60572 -12.07569 -11.81464 -11.42026 -11.18941 -10.92467 -10.84881 -10.58878 -10.21517 -9.98919 -9.69136 -9.52241 -9.10107 -8.38829 -8.21124 -7.41897 -6.01740 -4.04847 1.91735 2.76726 3.34158 3.35008 3.38541 3.43087 3.58730 4.43127 4.68305 5.04595 5.30394 5.38575 5.69374 6.00377 6.12642 6.54742 6.57451 6.73219 6.95958 7.16300 7.27435 7.46437 7.55804 7.65090 7.81999 8.16675 8.36387 8.49826 8.59413 9.01789 9.60491 11.05413 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.052111 B = 0.006374 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.181391 B = 4391.871182 C = 4741.894013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.213 3.787 3 H 0.040 0.960 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.671 5.671 13 C 0.132 3.868 14 C 0.329 3.671 15 N -0.554 5.554 16 C 0.471 3.529 17 N -0.827 5.827 18 N -0.381 5.381 19 N -0.486 5.486 20 H 0.437 0.563 21 H 0.006 0.994 22 H 0.092 0.908 23 H 0.029 0.971 24 H 0.261 0.739 25 H 0.326 0.674 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.413 0.587 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -2.016 -12.185 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.535 4.535 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.302 5.302 13 C 0.000 4.000 14 C 0.050 3.950 15 N -0.289 5.289 16 C 0.099 3.901 17 N -0.384 5.384 18 N -0.221 5.221 19 N -0.205 5.205 20 H 0.282 0.718 21 H 0.025 0.975 22 H 0.111 0.889 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.244 0.756 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.391 -2.054 -12.281 12.679 hybrid contribution -1.052 -0.428 0.543 1.258 sum 1.339 -2.483 -11.738 12.072 Atomic orbital electron populations 1.22476 1.00470 0.99399 1.00755 1.19244 0.89664 0.94698 0.85823 0.94240 1.21083 1.30410 1.12615 0.89379 0.91829 1.24932 0.95261 0.95189 0.99053 1.69858 1.37188 1.23150 1.23589 0.86531 0.79294 0.79532 0.81857 1.20179 1.21465 1.20398 1.60820 1.58575 1.08519 1.02308 1.20531 0.99118 0.95030 0.85326 1.24383 0.85988 0.92696 0.91977 1.70253 1.19178 1.24266 1.15186 1.20510 0.87481 0.92766 0.89336 1.40894 1.02718 1.65381 1.29430 1.78037 0.98549 1.29508 1.16054 1.47611 1.09751 1.44269 1.18885 0.71761 0.97542 0.88922 0.95178 0.92932 0.85698 0.93664 0.87746 0.75614 0.76046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 8.94 37.16 0.33 -3.51 15 2 C 0.21 5.08 2.57 -68.86 -0.18 4.91 15 3 H 0.04 1.02 7.80 -51.93 -0.40 0.62 15 4 C -0.50 -13.45 8.84 -34.44 -0.30 -13.76 15 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 15 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 15 7 N -0.90 -25.04 11.32 55.43 0.63 -24.42 15 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 15 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 12 N -0.67 -13.66 6.22 -109.21 -0.68 -14.34 15 13 C 0.13 2.22 6.11 -4.97 -0.03 2.19 15 14 C 0.33 5.45 7.74 -155.73 -1.21 4.25 15 15 N -0.55 -9.98 11.21 -11.13 -0.12 -10.10 15 16 C 0.47 7.59 9.44 -321.17 -3.03 4.56 15 17 N -0.83 -9.51 9.13 30.00 0.27 -9.24 15 18 N -0.38 -6.12 12.82 29.99 0.38 -5.74 15 19 N -0.49 -7.06 7.43 32.62 0.24 -6.82 15 20 H 0.44 4.86 8.96 -182.35 -1.63 3.23 15 21 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 15 22 H 0.09 2.34 6.07 -51.93 -0.32 2.03 15 23 H 0.03 0.65 8.13 -51.93 -0.42 0.22 15 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 25 H 0.33 6.31 8.46 -39.29 -0.33 5.98 15 26 H 0.05 0.66 7.44 -51.93 -0.39 0.28 15 27 H 0.10 1.82 8.06 -51.93 -0.42 1.40 15 28 H 0.41 4.07 8.96 -40.82 -0.37 3.71 15 29 H 0.41 3.64 8.96 -40.82 -0.37 3.27 15 LS Contribution 254.34 15.07 3.83 3.83 Total: -1.00 -31.10 254.34 -9.55 -40.65 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.58 Total: 9.80 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.51 Total: 0.07 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: 0.72 Total: -70.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.10 -9.55 -40.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308272279.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.736 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds