Wall clock time and date at job start Mon Mar 30 2020 03:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 N 1.30885 * 125.89643 * 275.02412 * 14 13 12 16 16 C 1.33649 * 109.77075 * 179.97438 * 15 14 13 17 17 N 1.39610 * 125.60841 * 179.97438 * 16 15 14 18 18 N 1.31199 * 108.77884 * 359.97438 * 16 15 14 19 19 N 1.34341 * 125.89184 * 94.71310 * 14 13 12 20 20 H 0.96998 * 126.76435 * 0.03892 * 19 14 13 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 25 25 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 26 26 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 27 27 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 28 28 H 0.96996 * 120.00176 * 359.97438 * 17 16 15 29 29 H 0.97002 * 119.99715 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8074 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 7 3.8449 -0.7228 -3.8627 16 6 3.9264 -1.4195 -5.0003 17 7 5.1088 -1.8155 -5.6280 18 7 2.7123 -1.6701 -5.4299 19 7 1.8279 -1.0981 -4.5011 20 1 0.8587 -1.1145 -4.5363 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7082 1.1609 3.4844 25 1 1.4496 -1.4980 -1.4101 26 1 1.0871 0.6162 -2.5525 27 1 2.7589 1.0461 -2.1182 28 1 5.9661 -1.5847 -5.2374 29 1 5.0730 -2.3214 -6.4549 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308272279.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:17 Heat of formation + Delta-G solvation = 68.623284 kcal Electronic energy + Delta-G solvation = -13526.599685 eV Core-core repulsion = 11099.607712 eV Total energy + Delta-G solvation = -2426.991973 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.96317 -37.97035 -35.77235 -34.55467 -32.92231 -31.76672 -29.84987 -27.22265 -26.36100 -22.87450 -22.15302 -21.77781 -19.15083 -18.38703 -17.25953 -16.88610 -16.79114 -16.48803 -15.95077 -15.26016 -14.81299 -14.17036 -13.66121 -13.56072 -12.95672 -12.76063 -12.71670 -12.35485 -12.26416 -12.11478 -11.88254 -11.06965 -10.95647 -10.80905 -10.44583 -9.28921 -9.03399 -8.07278 -6.17127 0.66517 1.46450 1.47571 1.55191 1.67323 2.09363 2.45832 2.49928 3.21903 3.48498 3.67002 3.98059 4.42669 4.62245 4.81497 4.94083 5.02620 5.09507 5.34231 5.42349 5.73431 5.83633 6.17230 6.29351 6.42928 6.58746 6.61934 6.73409 6.94815 7.48282 7.52127 8.97705 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.052111 B = 0.006374 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.181391 B = 4391.871182 C = 4741.894013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.218 3.782 3 H 0.015 0.985 4 C -0.517 4.517 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.680 5.680 13 C 0.139 3.861 14 C 0.325 3.675 15 N -0.585 5.585 16 C 0.459 3.541 17 N -0.811 5.811 18 N -0.392 5.392 19 N -0.471 5.471 20 H 0.452 0.548 21 H 0.037 0.963 22 H 0.063 0.937 23 H 0.032 0.968 24 H 0.261 0.739 25 H 0.333 0.667 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.421 0.579 29 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -2.570 -12.921 13.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.110 3.890 3 H 0.033 0.967 4 C -0.556 4.556 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.312 5.312 13 C 0.008 3.992 14 C 0.045 3.955 15 N -0.322 5.322 16 C 0.087 3.913 17 N -0.370 5.370 18 N -0.233 5.233 19 N -0.191 5.191 20 H 0.300 0.700 21 H 0.056 0.944 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.151 0.849 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.253 0.747 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.290 -2.625 -13.053 13.510 hybrid contribution -0.992 -0.259 0.691 1.236 sum 1.298 -2.883 -12.362 12.760 Atomic orbital electron populations 1.22270 0.99237 0.99556 1.00820 1.18979 0.90469 0.93136 0.86381 0.96693 1.21401 1.30488 1.12531 0.91155 0.93100 1.25612 0.95486 0.95867 1.01581 1.69970 1.37839 1.24040 1.24066 0.85647 0.78598 0.78690 0.78856 1.20189 1.20944 1.19880 1.60580 1.58719 1.09225 1.02683 1.20436 1.00464 0.94086 0.84254 1.24135 0.86101 0.93092 0.92177 1.70216 1.20213 1.25357 1.16373 1.20903 0.88635 0.92644 0.89132 1.40938 1.01834 1.64682 1.29536 1.77995 0.98741 1.30017 1.16572 1.47520 1.10430 1.43217 1.17975 0.69984 0.94396 0.91838 0.94866 0.92951 0.84948 0.90800 0.88654 0.74672 0.74526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.97 8.94 71.98 0.64 -6.32 15 2 C 0.22 10.37 2.57 44.17 0.11 10.48 15 3 H 0.02 0.79 7.80 -2.39 -0.02 0.77 15 4 C -0.52 -28.10 8.84 25.60 0.23 -27.87 15 5 H 0.05 2.83 7.81 -2.91 -0.02 2.81 15 6 C 0.01 0.71 5.30 84.66 0.45 1.16 15 7 N -0.92 -51.37 11.32 21.45 0.24 -51.13 15 8 Si 0.96 43.56 29.54 68.60 2.03 45.58 15 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 15 12 N -0.68 -27.06 6.22 -499.43 -3.11 -30.17 15 13 C 0.14 4.48 6.11 85.56 0.52 5.01 15 14 C 0.33 10.26 7.74 138.24 1.07 11.33 15 15 N -0.59 -20.41 11.21 -189.12 -2.12 -22.53 15 16 C 0.46 14.08 9.44 260.92 2.46 16.54 15 17 N -0.81 -17.21 9.13 -59.01 -0.54 -17.75 15 18 N -0.39 -11.87 12.82 -59.03 -0.76 -12.63 15 19 N -0.47 -12.71 7.43 -50.73 -0.38 -13.09 15 20 H 0.45 8.94 8.96 -213.11 -1.91 7.03 15 21 H 0.04 1.37 7.45 -2.39 -0.02 1.36 15 22 H 0.06 3.18 6.07 -2.39 -0.01 3.17 15 23 H 0.03 1.39 8.13 -2.38 -0.02 1.37 15 24 H 0.26 14.00 8.31 -92.71 -0.77 13.23 15 25 H 0.33 12.41 8.46 -89.70 -0.76 11.65 15 26 H 0.07 1.97 7.44 -2.39 -0.02 1.95 15 27 H 0.10 3.26 8.06 -2.39 -0.02 3.24 15 28 H 0.42 7.60 8.96 -92.71 -0.83 6.77 15 29 H 0.42 6.66 8.96 -92.71 -0.83 5.83 15 Total: -1.00 -65.14 254.34 -2.25 -67.40 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -3.11 Total: 23.98 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 5.49 Total: 10.33 kcal Atomic # 7 Polarization: -140.63 SS G_CDS: -6.66 Total: -147.29 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.14 -2.25 -67.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308272279.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.019 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds