Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31134 * 126.54978 * 2 1 4 4 C 1.34500 * 105.61461 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.28414 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47421 * 90.00205 * 5 4 3 7 7 N 1.46496 * 109.47197 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00017 * 89.99814 * 7 6 5 9 9 C 1.36938 * 119.99944 * 270.00038 * 7 6 5 10 10 H 1.08006 * 120.00046 * 23.04194 * 9 7 6 11 11 C 1.38816 * 120.00023 * 203.04936 * 9 7 6 12 12 N 1.31620 * 120.00080 * 12.93460 * 11 9 7 13 13 Si 1.86800 * 119.99698 * 192.93429 * 11 9 7 14 14 H 1.48491 * 109.47529 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46552 * 120.00130 * 13 11 9 16 16 H 1.48501 * 109.47166 * 239.99588 * 13 11 9 17 17 N 1.29941 * 107.42216 * 359.97438 * 4 3 2 18 18 O 1.21294 * 110.25323 * 359.70762 * 17 4 3 19 19 H 1.08995 * 109.47267 * 89.99736 * 1 2 3 20 20 H 1.09005 * 109.46910 * 209.99840 * 1 2 3 21 21 H 1.08995 * 109.47307 * 329.99415 * 1 2 3 22 22 H 1.08998 * 109.46987 * 210.00094 * 5 4 3 23 23 H 1.08996 * 109.47345 * 329.99776 * 5 4 3 24 24 H 1.08998 * 109.46950 * 299.99912 * 6 5 4 25 25 H 1.09001 * 109.46518 * 59.99529 * 6 5 4 26 26 H 1.08997 * 109.46620 * 95.12495 * 8 7 6 27 27 H 1.08995 * 109.46861 * 215.11912 * 8 7 6 28 28 H 1.08992 * 109.47014 * 335.12359 * 8 7 6 29 29 H 0.96995 * 120.00121 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8111 1.3888 -0.0014 6 6 5.2407 1.6651 1.4409 7 7 6.4727 2.4578 1.4401 8 6 6.4023 3.9211 1.4397 9 6 7.6902 1.8309 1.4396 10 1 7.7761 0.8183 1.0738 11 6 8.8139 2.4968 1.9096 12 7 8.6798 3.6186 2.5848 13 14 10.5164 1.8006 1.5837 14 1 10.3956 0.5391 0.8097 15 1 11.3130 2.7842 0.8071 16 1 11.1942 1.5248 2.8760 17 7 3.4645 -0.7241 -0.0003 18 8 2.3030 -1.0735 0.0061 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3634 0.8899 0.5139 22 1 5.5981 0.8372 -0.5155 23 1 4.6345 2.3336 -0.5153 24 1 4.4537 2.2167 1.9551 25 1 5.4173 0.7202 1.9547 26 1 6.4770 4.2886 2.4631 27 1 7.2241 4.3242 0.8480 28 1 5.4534 4.2390 1.0078 29 1 9.4650 4.0841 2.9128 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308285240.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = 85.242417 kcal Electronic energy + Delta-G solvation = -13627.321810 eV Core-core repulsion = 11168.757746 eV Total energy + Delta-G solvation = -2458.564064 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.35577 -36.44869 -35.35376 -33.66842 -31.68253 -29.48897 -28.63932 -25.87186 -24.61355 -23.12990 -21.29464 -20.26282 -17.95152 -17.17855 -16.64726 -15.12733 -14.84313 -13.97171 -13.68749 -13.58774 -13.36167 -13.05175 -12.60097 -12.14184 -11.92751 -11.69268 -11.04225 -10.88356 -10.83429 -10.76543 -10.49516 -10.21738 -9.87548 -9.82298 -9.61499 -8.54508 -6.75977 -5.71735 -3.19501 1.34272 2.49209 2.97870 3.39086 3.46158 3.48938 3.86746 4.35216 4.54094 5.05724 5.08709 5.15180 5.43038 5.49987 5.67244 5.86530 5.98534 6.05696 6.22805 6.36929 6.66544 6.76240 6.87402 7.38826 7.74772 7.82851 8.39988 8.44372 9.24127 9.86328 10.35402 11.33051 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.063267 B = 0.006382 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.460638 B = 4386.482299 C = 4713.262073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.161 3.839 3 N -0.482 5.482 4 C 0.191 3.809 5 C -0.056 4.056 6 C 0.162 3.838 7 N -0.599 5.599 8 C 0.160 3.840 9 C -0.259 4.259 10 H 0.070 0.930 11 C 0.003 3.997 12 N -0.906 5.906 13 Si 0.905 3.095 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.290 1.290 17 N -0.389 5.389 18 O 0.068 5.932 19 H 0.097 0.903 20 H 0.094 0.906 21 H 0.102 0.898 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.042 0.958 28 H 0.000 1.000 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.058 -5.482 -5.034 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.060 4.060 3 N -0.217 5.217 4 C -0.082 4.082 5 C -0.098 4.098 6 C 0.033 3.967 7 N -0.321 5.321 8 C 0.016 3.984 9 C -0.388 4.388 10 H 0.088 0.912 11 C -0.196 4.196 12 N -0.551 5.551 13 Si 0.735 3.265 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.217 1.217 17 N -0.098 5.098 18 O 0.011 5.989 19 H 0.116 0.884 20 H 0.113 0.887 21 H 0.120 0.880 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.110 -5.444 -4.949 15.913 hybrid contribution 0.831 -0.332 -0.171 0.911 sum -13.279 -5.776 -5.120 15.359 Atomic orbital electron populations 1.20306 0.80675 1.05579 1.05019 1.28810 0.98844 0.81321 0.97050 1.71921 1.00703 1.28880 1.20175 1.26244 0.95461 0.88046 0.98412 1.21022 0.87307 0.97445 1.04073 1.20591 0.89361 0.95996 0.90784 1.43916 1.00662 1.01785 1.85757 1.20834 0.95401 0.82532 0.99662 1.19269 0.84722 0.99141 1.35713 0.91236 1.25042 0.98564 0.97904 0.98064 1.70087 1.28194 1.18343 1.38496 0.86168 0.84411 0.78359 0.77534 1.20244 1.21550 1.21683 1.74667 0.96720 1.16183 1.22238 1.85267 1.11718 1.35790 1.66123 0.88434 0.88740 0.87964 0.89299 0.89490 0.94078 0.93275 0.94909 0.93944 0.98105 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.00 0.38 0.01 15 2 C 0.16 2.04 8.51 -13.06 -0.11 1.93 15 3 N -0.48 -7.89 11.55 -9.87 -0.11 -8.00 15 4 C 0.19 3.48 7.47 -156.37 -1.17 2.31 15 5 C -0.06 -1.09 6.17 -27.88 -0.17 -1.27 15 6 C 0.16 3.59 5.63 -4.04 -0.02 3.57 15 7 N -0.60 -15.67 2.92 -181.12 -0.53 -16.20 15 8 C 0.16 4.06 8.98 59.85 0.54 4.60 15 9 C -0.26 -7.33 9.65 -15.06 -0.15 -7.48 15 10 H 0.07 1.93 7.86 -52.48 -0.41 1.52 15 11 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 15 12 N -0.91 -26.95 10.71 55.49 0.59 -26.35 15 13 Si 0.91 22.27 29.57 -169.99 -5.03 17.25 15 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 17 N -0.39 -6.97 12.16 30.89 0.38 -6.60 15 18 O 0.07 1.00 11.31 18.11 0.20 1.21 15 19 H 0.10 0.44 8.14 -51.93 -0.42 0.02 15 20 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 15 21 H 0.10 0.58 8.14 -51.93 -0.42 0.15 15 22 H 0.09 1.79 8.14 -51.93 -0.42 1.37 15 23 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 24 H 0.04 0.88 8.07 -51.93 -0.42 0.46 15 25 H 0.05 1.12 8.04 -51.93 -0.42 0.70 15 26 H 0.03 0.89 7.34 -51.93 -0.38 0.51 15 27 H 0.04 1.13 7.34 -51.93 -0.38 0.75 15 28 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 15 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -32.64 257.27 -5.09 -37.73 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: -3.68 Total: -6.57 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.79 Total: 3.67 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.33 Total: -57.15 kcal Atomic # 8 Polarization: 1.00 SS G_CDS: 0.20 Total: 1.21 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.64 -5.09 -37.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308285240.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.971 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds