Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31134 * 126.54978 * 2 1 4 4 C 1.34500 * 105.61461 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.28414 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47421 * 90.00205 * 5 4 3 7 7 N 1.46496 * 109.47197 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00017 * 89.99814 * 7 6 5 9 9 C 1.36938 * 119.99944 * 270.00038 * 7 6 5 10 10 H 1.08006 * 120.00046 * 23.04194 * 9 7 6 11 11 C 1.38816 * 120.00023 * 203.04936 * 9 7 6 12 12 N 1.31620 * 120.00080 * 12.93460 * 11 9 7 13 13 Si 1.86800 * 119.99698 * 192.93429 * 11 9 7 14 14 H 1.48491 * 109.47529 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46552 * 120.00130 * 13 11 9 16 16 H 1.48501 * 109.47166 * 239.99588 * 13 11 9 17 17 N 1.29941 * 107.42216 * 359.97438 * 4 3 2 18 18 O 1.21294 * 110.25323 * 359.70762 * 17 4 3 19 19 H 1.08995 * 109.47267 * 89.99736 * 1 2 3 20 20 H 1.09005 * 109.46910 * 209.99840 * 1 2 3 21 21 H 1.08995 * 109.47307 * 329.99415 * 1 2 3 22 22 H 1.08998 * 109.46987 * 210.00094 * 5 4 3 23 23 H 1.08996 * 109.47345 * 329.99776 * 5 4 3 24 24 H 1.08998 * 109.46950 * 299.99912 * 6 5 4 25 25 H 1.09001 * 109.46518 * 59.99529 * 6 5 4 26 26 H 1.08997 * 109.46620 * 95.12495 * 8 7 6 27 27 H 1.08995 * 109.46861 * 215.11912 * 8 7 6 28 28 H 1.08992 * 109.47014 * 335.12359 * 8 7 6 29 29 H 0.96995 * 120.00121 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8111 1.3888 -0.0014 6 6 5.2407 1.6651 1.4409 7 7 6.4727 2.4578 1.4401 8 6 6.4023 3.9211 1.4397 9 6 7.6902 1.8309 1.4396 10 1 7.7761 0.8183 1.0738 11 6 8.8139 2.4968 1.9096 12 7 8.6798 3.6186 2.5848 13 14 10.5164 1.8006 1.5837 14 1 10.3956 0.5391 0.8097 15 1 11.3130 2.7842 0.8071 16 1 11.1942 1.5248 2.8760 17 7 3.4645 -0.7241 -0.0003 18 8 2.3030 -1.0735 0.0061 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3634 0.8899 0.5139 22 1 5.5981 0.8372 -0.5155 23 1 4.6345 2.3336 -0.5153 24 1 4.4537 2.2167 1.9551 25 1 5.4173 0.7202 1.9547 26 1 6.4770 4.2886 2.4631 27 1 7.2241 4.3242 0.8480 28 1 5.4534 4.2390 1.0078 29 1 9.4650 4.0841 2.9128 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308285240.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = 62.063885 kcal Electronic energy + Delta-G solvation = -13628.326907 eV Core-core repulsion = 11168.757746 eV Total energy + Delta-G solvation = -2459.569161 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.60279 -38.15283 -36.86390 -34.92941 -33.54369 -31.14770 -29.60230 -27.97887 -26.35840 -24.48155 -22.86322 -21.87437 -19.21991 -18.75963 -18.39744 -17.03155 -16.12017 -15.72347 -15.32760 -15.05464 -14.46137 -14.12361 -14.08591 -13.71026 -13.43032 -12.99904 -12.86241 -12.79804 -12.47926 -12.26621 -12.18670 -12.08489 -11.92435 -11.70512 -10.88457 -10.66300 -8.86959 -7.87665 -5.39021 0.23377 1.20863 1.44848 1.45489 1.56915 2.02590 2.45922 2.71788 3.10428 3.26091 3.68466 4.04904 4.24621 4.35637 4.50946 4.63745 4.68610 4.70365 4.81638 4.97757 5.07483 5.11659 5.20815 5.31510 5.58842 5.66740 6.27257 7.09518 7.25756 7.78065 8.22848 9.15747 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.063267 B = 0.006382 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.460638 B = 4386.482299 C = 4713.262073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.182 3.818 3 N -0.511 5.511 4 C 0.174 3.826 5 C -0.039 4.039 6 C 0.168 3.832 7 N -0.617 5.617 8 C 0.174 3.826 9 C -0.271 4.271 10 H 0.069 0.931 11 C -0.050 4.050 12 N -0.937 5.937 13 Si 0.972 3.028 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.290 1.290 17 N -0.412 5.412 18 O 0.074 5.926 19 H 0.125 0.875 20 H 0.124 0.876 21 H 0.113 0.887 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.008 0.992 27 H 0.020 0.980 28 H 0.033 0.967 29 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 -6.432 -5.731 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.037 4.037 3 N -0.245 5.245 4 C -0.099 4.099 5 C -0.081 4.081 6 C 0.040 3.960 7 N -0.340 5.340 8 C 0.029 3.971 9 C -0.401 4.401 10 H 0.087 0.913 11 C -0.246 4.246 12 N -0.583 5.583 13 Si 0.800 3.200 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.217 1.217 17 N -0.121 5.121 18 O 0.016 5.984 19 H 0.143 0.857 20 H 0.142 0.858 21 H 0.132 0.868 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.778 -6.403 -5.659 17.944 hybrid contribution 1.140 -0.095 0.045 1.145 sum -14.638 -6.497 -5.614 16.971 Atomic orbital electron populations 1.20778 0.75908 1.07560 1.07267 1.30029 1.00671 0.79653 0.93371 1.71903 1.00249 1.30267 1.22114 1.25936 0.95745 0.88237 0.99970 1.20561 0.88035 0.97829 1.01640 1.20589 0.88059 0.94865 0.92510 1.44133 1.01377 1.02287 1.86168 1.20602 0.96165 0.82321 0.97971 1.19551 0.85936 0.99304 1.35338 0.91330 1.25842 1.02156 0.98449 0.98126 1.70240 1.28947 1.19554 1.39532 0.85133 0.79699 0.77938 0.77237 1.19236 1.21324 1.21652 1.74642 0.98470 1.16161 1.22840 1.85228 1.11057 1.36213 1.65947 0.85729 0.85790 0.86835 0.90446 0.89093 0.93367 0.94539 0.97395 0.96112 0.94823 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.24 0.75 0.27 15 2 C 0.18 4.15 8.51 88.38 0.75 4.90 15 3 N -0.51 -15.87 11.55 -303.23 -3.50 -19.38 15 4 C 0.17 6.21 7.47 138.46 1.03 7.24 15 5 C -0.04 -1.51 6.17 29.85 0.18 -1.33 15 6 C 0.17 7.46 5.63 86.38 0.49 7.94 15 7 N -0.62 -32.57 2.92 -726.95 -2.12 -34.69 15 8 C 0.17 8.91 8.98 127.77 1.15 10.06 15 9 C -0.27 -15.51 9.65 84.03 0.81 -14.70 15 10 H 0.07 3.85 7.86 -2.91 -0.02 3.82 15 11 C -0.05 -2.90 5.10 84.86 0.43 -2.47 15 12 N -0.94 -56.56 10.71 21.65 0.23 -56.33 15 13 Si 0.97 46.10 29.57 68.60 2.03 48.13 15 14 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 15 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 16 H -0.29 -13.64 7.11 99.48 0.71 -12.94 15 17 N -0.41 -14.42 12.16 -60.35 -0.73 -15.16 15 18 O 0.07 2.05 11.31 74.86 0.85 2.89 15 19 H 0.12 0.51 8.14 -2.39 -0.02 0.49 15 20 H 0.12 0.40 8.14 -2.38 -0.02 0.38 15 21 H 0.11 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.08 3.15 8.14 -2.39 -0.02 3.13 15 23 H 0.09 3.41 8.14 -2.39 -0.02 3.39 15 24 H 0.05 2.05 8.07 -2.39 -0.02 2.03 15 25 H 0.04 1.69 8.04 -2.39 -0.02 1.67 15 26 H 0.01 0.43 7.34 -2.39 -0.02 0.41 15 27 H 0.02 1.11 7.34 -2.39 -0.02 1.09 15 28 H 0.03 1.46 8.03 -2.39 -0.02 1.44 15 29 H 0.25 14.55 8.31 -92.71 -0.77 13.78 15 Total: -1.00 -70.75 257.27 3.48 -67.27 By element: Atomic # 1 Polarization: -5.80 SS G_CDS: 1.14 Total: -4.66 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.60 Total: 11.92 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -6.13 Total: -125.55 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: 0.85 Total: 2.89 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.75 3.48 -67.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308285240.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.336 kcal (2) G-P(sol) polarization free energy of solvation -70.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds