Wall clock time and date at job start Mon Mar 30 2020 02:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 H 1.09008 * 109.47260 * 304.99930 * 12 11 10 14 14 O 1.42901 * 109.47622 * 65.00060 * 12 11 10 15 15 C 1.50697 * 109.47209 * 185.00333 * 12 11 10 16 16 C 1.34510 * 125.79550 * 99.71141 * 15 12 11 17 17 C 1.41385 * 106.84330 * 179.88901 * 16 15 12 18 18 C 1.34512 * 106.83998 * 0.37569 * 17 16 15 19 19 O 1.34296 * 108.41877 * 359.76665 * 18 17 16 20 20 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 22 22 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 23 23 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 24 24 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 25 25 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 26 26 H 0.96697 * 113.99359 * 59.99411 * 14 12 11 27 27 H 1.08007 * 126.57956 * 0.03335 * 16 15 12 28 28 H 1.07998 * 126.57813 * 180.16428 * 17 16 15 29 29 H 1.08000 * 125.78327 * 179.74912 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 1 3.2116 -5.9180 -0.8418 14 8 3.2708 -6.0156 1.2211 15 6 1.8155 -7.3642 -0.1250 16 6 1.6746 -8.0788 -1.2558 17 6 0.9453 -9.2418 -0.9172 18 6 0.6770 -9.1642 0.3986 19 8 1.2065 -8.0249 0.8731 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8403 -3.5488 -0.7819 24 1 0.8798 -4.9817 0.8886 25 1 0.8805 -4.9812 -0.8914 26 1 2.7268 -6.1215 2.0135 27 1 2.0490 -7.8160 -2.2342 28 1 0.6560 -10.0378 -1.5873 29 1 0.1284 -9.8942 0.9753 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393546471.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:38 Heat of formation + Delta-G solvation = -37.921593 kcal Electronic energy + Delta-G solvation = -13406.256037 eV Core-core repulsion = 10910.058429 eV Total energy + Delta-G solvation = -2496.197607 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.59284 -37.45827 -34.70743 -33.09301 -32.39139 -30.63294 -27.90231 -25.49919 -22.58699 -21.81828 -21.33845 -20.45805 -17.92111 -16.72861 -15.95571 -15.85141 -15.30888 -14.85343 -14.29947 -13.99861 -13.17886 -12.88939 -12.85567 -12.57655 -12.30698 -11.62737 -11.32767 -11.15439 -10.76406 -10.71748 -10.18298 -9.97499 -9.81326 -9.19681 -8.49182 -8.47595 -7.33347 -6.03969 -4.05969 1.68918 2.57206 2.93284 3.32302 3.38278 3.43601 4.40543 4.53127 4.61692 4.96079 4.98599 5.26395 5.32137 5.34003 5.54476 5.74806 5.83163 6.04278 6.07042 6.20924 6.45202 7.08258 7.18793 7.37191 7.75042 7.80321 8.09727 8.33981 8.56670 9.03219 9.58985 11.07237 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.070869 B = 0.005416 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.997719 B = 5168.313375 C = 5306.440809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.680 5.680 11 C 0.031 3.969 12 C 0.195 3.805 13 H 0.122 0.878 14 O -0.539 6.539 15 C -0.033 4.033 16 C -0.209 4.209 17 C -0.214 4.214 18 C -0.046 4.046 19 O -0.172 6.172 20 H 0.261 0.739 21 H -0.013 1.013 22 H 0.028 0.972 23 H 0.330 0.670 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.379 0.621 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -16.334 -1.034 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.310 5.310 11 C -0.100 4.100 12 C 0.135 3.865 13 H 0.140 0.860 14 O -0.344 6.344 15 C -0.084 4.084 16 C -0.229 4.229 17 C -0.233 4.233 18 C -0.113 4.113 19 O -0.068 6.068 20 H 0.071 0.929 21 H 0.004 0.996 22 H 0.046 0.954 23 H 0.146 0.854 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.226 0.774 27 H 0.166 0.834 28 H 0.165 0.835 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.825 -15.997 -0.445 16.107 hybrid contribution -0.687 0.545 -0.878 1.241 sum 1.138 -15.452 -1.323 15.550 Atomic orbital electron populations 1.69969 1.06117 1.26830 1.50904 1.25003 0.94897 0.99443 0.95304 0.86454 0.79817 0.82861 0.78029 1.20716 1.21242 1.19692 1.21182 0.93608 0.90113 1.50357 0.91804 1.19584 0.90556 0.87311 0.95829 1.60619 1.20890 1.00428 1.49077 1.22597 0.95201 0.91002 1.01173 1.20583 0.91753 0.84589 0.89590 0.86001 1.86577 1.37159 1.95470 1.15146 1.23655 1.00330 0.97638 0.86766 1.21611 1.05765 0.96170 0.99333 1.21819 1.04860 1.00622 0.96045 1.24030 1.02848 0.89272 0.95182 1.83991 1.55445 1.29706 1.37633 0.92895 0.99559 0.95385 0.85356 0.91005 0.95082 0.77392 0.83400 0.83533 0.78197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 15 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 15 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.51 -14.73 9.32 -34.44 -0.32 -15.05 15 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 15 9 C 0.19 5.13 5.44 -4.98 -0.03 5.10 15 10 N -0.68 -14.66 6.44 -115.06 -0.74 -15.40 15 11 C 0.03 0.55 5.30 -3.82 -0.02 0.53 15 12 C 0.20 2.91 3.61 -27.89 -0.10 2.81 15 13 H 0.12 1.68 8.13 -51.92 -0.42 1.26 15 14 O -0.54 -8.53 13.27 -37.35 -0.50 -9.02 15 15 C -0.03 -0.46 6.18 -35.63 -0.22 -0.68 15 16 C -0.21 -2.68 10.80 -39.70 -0.43 -3.10 15 17 C -0.21 -2.40 10.91 -39.70 -0.43 -2.83 15 18 C -0.05 -0.50 12.09 29.42 0.36 -0.14 15 19 O -0.17 -2.35 10.58 3.59 0.04 -2.31 15 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 21 H -0.01 -0.37 8.14 -51.93 -0.42 -0.80 15 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.33 6.73 8.72 -39.29 -0.34 6.39 15 24 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 26 H 0.38 5.04 8.97 45.56 0.41 5.45 15 27 H 0.15 1.63 8.06 -52.48 -0.42 1.20 15 28 H 0.15 1.26 8.06 -52.49 -0.42 0.84 15 29 H 0.20 1.35 8.06 -52.49 -0.42 0.93 15 LS Contribution 262.24 15.07 3.95 3.95 Total: -1.00 -32.22 262.24 -5.68 -37.90 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -2.86 Total: 6.25 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.29 Total: -11.88 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.00 Total: -41.72 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.46 Total: -11.33 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.22 -5.68 -37.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393546471.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.018 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds