Wall clock time and date at job start Mon Mar 30 2020 02:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 H 1.09008 * 109.47260 * 304.99930 * 12 11 10 14 14 O 1.42901 * 109.47622 * 65.00060 * 12 11 10 15 15 C 1.50697 * 109.47209 * 185.00333 * 12 11 10 16 16 C 1.34510 * 125.79550 * 99.71141 * 15 12 11 17 17 C 1.41385 * 106.84330 * 179.88901 * 16 15 12 18 18 C 1.34512 * 106.83998 * 0.37569 * 17 16 15 19 19 O 1.34296 * 108.41877 * 359.76665 * 18 17 16 20 20 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 22 22 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 23 23 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 24 24 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 25 25 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 26 26 H 0.96697 * 113.99359 * 59.99411 * 14 12 11 27 27 H 1.08007 * 126.57956 * 0.03335 * 16 15 12 28 28 H 1.07998 * 126.57813 * 180.16428 * 17 16 15 29 29 H 1.08000 * 125.78327 * 179.74912 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 1 3.2116 -5.9180 -0.8418 14 8 3.2708 -6.0156 1.2211 15 6 1.8155 -7.3642 -0.1250 16 6 1.6746 -8.0788 -1.2558 17 6 0.9453 -9.2418 -0.9172 18 6 0.6770 -9.1642 0.3986 19 8 1.2065 -8.0249 0.8731 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8403 -3.5488 -0.7819 24 1 0.8798 -4.9817 0.8886 25 1 0.8805 -4.9812 -0.8914 26 1 2.7268 -6.1215 2.0135 27 1 2.0490 -7.8160 -2.2342 28 1 0.6560 -10.0378 -1.5873 29 1 0.1284 -9.8942 0.9753 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393546471.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:37 Heat of formation + Delta-G solvation = -63.424000 kcal Electronic energy + Delta-G solvation = -13407.361904 eV Core-core repulsion = 10910.058429 eV Total energy + Delta-G solvation = -2497.303475 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.53648 -38.79263 -36.46692 -34.48763 -33.98741 -31.85065 -29.52742 -27.17546 -24.17844 -23.25414 -22.67196 -21.47023 -18.98681 -18.66005 -17.35623 -16.87731 -16.73897 -16.53149 -15.81135 -15.57360 -14.67042 -14.41406 -14.02323 -13.76696 -13.48521 -13.44744 -13.02420 -12.67787 -12.62649 -12.47123 -12.09063 -11.50046 -11.12531 -10.86369 -10.67556 -9.44586 -9.16554 -8.23950 -6.35332 0.73263 1.41648 1.43562 1.55668 1.67214 2.00668 2.40138 3.09548 3.33957 3.43606 3.88742 3.95585 4.08502 4.17312 4.27991 4.60798 4.73627 4.89554 5.00821 5.04350 5.13287 5.22284 5.58484 5.59203 5.98116 6.14456 6.37214 6.60985 6.72510 6.86629 7.35687 8.87804 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.070869 B = 0.005416 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.997719 B = 5168.313375 C = 5306.440809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.679 5.679 11 C 0.035 3.965 12 C 0.209 3.791 13 H 0.133 0.867 14 O -0.553 6.553 15 C -0.063 4.063 16 C -0.210 4.210 17 C -0.226 4.226 18 C -0.041 4.041 19 O -0.189 6.189 20 H 0.266 0.734 21 H -0.037 1.037 22 H -0.001 1.001 23 H 0.338 0.662 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.387 0.613 27 H 0.162 0.838 28 H 0.173 0.827 29 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -17.055 -1.360 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.310 5.310 11 C -0.095 4.095 12 C 0.149 3.851 13 H 0.151 0.849 14 O -0.359 6.359 15 C -0.113 4.113 16 C -0.229 4.229 17 C -0.245 4.245 18 C -0.107 4.107 19 O -0.086 6.086 20 H 0.074 0.926 21 H -0.019 1.019 22 H 0.017 0.983 23 H 0.156 0.844 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.236 0.764 27 H 0.179 0.821 28 H 0.191 0.809 29 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.501 -16.744 -0.775 16.948 hybrid contribution -0.955 0.642 -0.772 1.386 sum 1.546 -16.102 -1.546 16.250 Atomic orbital electron populations 1.70095 1.07845 1.28080 1.51467 1.25983 0.95819 1.03496 0.94494 0.85289 0.78451 0.77747 0.78552 1.19525 1.20698 1.18892 1.21541 0.93901 0.91311 1.50722 0.91601 1.19233 0.90617 0.88873 0.93297 1.60462 1.20181 1.00772 1.49565 1.22617 0.95936 0.90263 1.00691 1.20349 0.90941 0.84190 0.89658 0.84911 1.86540 1.37917 1.95521 1.15874 1.23390 1.02400 0.97954 0.87592 1.21978 1.05018 0.96449 0.99482 1.22204 1.04738 1.00846 0.96733 1.24911 1.01499 0.88559 0.95778 1.83974 1.55854 1.30754 1.38019 0.92561 1.01924 0.98264 0.84437 0.91954 0.95014 0.76427 0.82071 0.80920 0.74381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.70 15 2 C 0.00 0.01 5.46 84.66 0.46 0.48 15 3 Si 0.98 44.62 29.54 68.60 2.03 46.64 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 15 7 C -0.54 -31.06 9.32 25.60 0.24 -30.82 15 8 H 0.07 3.70 7.81 -2.91 -0.02 3.68 15 9 C 0.21 11.32 5.44 85.56 0.47 11.79 15 10 N -0.68 -29.67 6.44 -517.93 -3.34 -33.00 15 11 C 0.04 1.26 5.30 86.30 0.46 1.71 15 12 C 0.21 6.13 3.61 29.84 0.11 6.23 15 13 H 0.13 3.54 8.13 -2.38 -0.02 3.52 15 14 O -0.55 -17.25 13.27 -146.95 -1.95 -19.20 15 15 C -0.06 -1.70 6.18 24.83 0.15 -1.55 15 16 C -0.21 -5.01 10.80 22.19 0.24 -4.77 15 17 C -0.23 -4.49 10.91 22.19 0.24 -4.24 15 18 C -0.04 -0.78 12.09 66.97 0.81 0.03 15 19 O -0.19 -4.94 10.58 -0.43 0.00 -4.95 15 20 H 0.27 15.14 8.31 -92.71 -0.77 14.37 15 21 H -0.04 -2.14 8.14 -2.39 -0.02 -2.16 15 22 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 23 H 0.34 13.80 8.72 -89.69 -0.78 13.02 15 24 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 15 26 H 0.39 10.30 8.97 -74.06 -0.66 9.64 15 27 H 0.16 3.25 8.06 -2.91 -0.02 3.22 15 28 H 0.17 2.39 8.06 -2.91 -0.02 2.37 15 29 H 0.24 2.36 8.06 -2.91 -0.02 2.34 15 Total: -1.00 -68.85 262.24 -0.09 -68.94 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -0.29 Total: 19.41 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 3.18 Total: -21.14 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -3.05 Total: -89.70 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -1.96 Total: -24.15 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.85 -0.09 -68.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393546471.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.515 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds