Wall clock time and date at job start Mon Mar 30 2020 02:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99872 * 2 1 4 4 H 1.48496 * 109.47239 * 270.00267 * 3 2 1 5 5 H 1.48503 * 109.46898 * 29.99954 * 3 2 1 6 6 H 1.48499 * 109.47158 * 150.00012 * 3 2 1 7 7 C 1.37875 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00318 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00107 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47083 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99897 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47067 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47474 * 59.99861 * 12 11 10 14 14 O 1.42900 * 109.47211 * 299.99782 * 12 11 10 15 15 C 1.50702 * 109.46785 * 180.02562 * 12 11 10 16 16 C 1.34512 * 125.79146 * 264.99695 * 15 12 11 17 17 C 1.41376 * 106.84688 * 179.75198 * 16 15 12 18 18 C 1.34517 * 106.83881 * 0.37683 * 17 16 15 19 19 O 1.34305 * 125.78962 * 84.97917 * 15 12 11 20 20 H 0.96998 * 120.00312 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46644 * 60.00025 * 9 7 2 22 22 H 1.08999 * 109.46529 * 300.00212 * 9 7 2 23 23 H 1.00898 * 111.00525 * 56.05081 * 10 9 7 24 24 H 1.09000 * 109.47087 * 59.99699 * 11 10 9 25 25 H 1.09003 * 109.47251 * 300.00064 * 11 10 9 26 26 H 0.96706 * 113.99859 * 300.00327 * 14 12 11 27 27 H 1.08006 * 126.57585 * 359.97438 * 16 15 12 28 28 H 1.07998 * 126.58562 * 180.23597 * 17 16 15 29 29 H 1.08002 * 125.79423 * 179.89440 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5305 -6.0429 -0.0005 13 1 3.1548 -5.9686 0.8899 14 8 3.3506 -5.9452 -1.1667 15 6 1.8121 -7.3677 -0.0017 16 6 1.5196 -8.1050 1.0846 17 6 0.8423 -9.2584 0.6267 18 6 0.7688 -9.1611 -0.7129 19 8 1.3550 -8.0123 -1.0877 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5570 0.8897 23 1 2.8406 -3.5486 0.7808 24 1 0.8809 -4.9812 -0.8913 25 1 0.8803 -4.9818 0.8886 26 1 2.8604 -6.0037 -1.9982 27 1 1.7537 -7.8608 2.1103 28 1 0.4596 -10.0643 1.2354 29 1 0.3118 -9.8821 -1.3745 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393546472.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:41 Heat of formation + Delta-G solvation = -37.864537 kcal Electronic energy + Delta-G solvation = -13411.533872 eV Core-core repulsion = 10915.338739 eV Total energy + Delta-G solvation = -2496.195133 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.58676 -37.45051 -34.68805 -33.09569 -32.38121 -30.63316 -27.89566 -25.50329 -22.57583 -21.79817 -21.34416 -20.45210 -17.91540 -16.71917 -15.94328 -15.84907 -15.33316 -14.85438 -14.29705 -13.94425 -13.19609 -12.89929 -12.85307 -12.57838 -12.30535 -11.64010 -11.32105 -11.11410 -10.80410 -10.67047 -10.17787 -9.97279 -9.81590 -9.20405 -8.48661 -8.46397 -7.33057 -6.03890 -4.05957 1.69458 2.57681 2.93083 3.32997 3.38500 3.42691 4.40919 4.53678 4.62193 4.97118 4.99241 5.26849 5.31800 5.32272 5.56189 5.74953 5.83602 6.04879 6.07487 6.20194 6.45606 7.08338 7.18792 7.37392 7.75397 7.82045 8.09844 8.34325 8.56973 9.03317 9.59064 11.07300 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.071667 B = 0.005424 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.600614 B = 5160.726241 C = 5308.595447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.679 5.679 11 C 0.031 3.969 12 C 0.195 3.805 13 H 0.121 0.879 14 O -0.538 6.538 15 C -0.032 4.032 16 C -0.211 4.211 17 C -0.214 4.214 18 C -0.046 4.046 19 O -0.171 6.171 20 H 0.262 0.738 21 H 0.028 0.972 22 H -0.013 1.013 23 H 0.330 0.670 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.379 0.621 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -16.305 0.631 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.310 5.310 11 C -0.100 4.100 12 C 0.134 3.866 13 H 0.139 0.861 14 O -0.343 6.343 15 C -0.083 4.083 16 C -0.230 4.230 17 C -0.233 4.233 18 C -0.114 4.114 19 O -0.067 6.067 20 H 0.071 0.929 21 H 0.046 0.954 22 H 0.004 0.996 23 H 0.147 0.853 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.227 0.773 27 H 0.166 0.834 28 H 0.165 0.835 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.832 -15.988 0.093 16.093 hybrid contribution -0.703 0.556 0.795 1.198 sum 1.129 -15.432 0.889 15.499 Atomic orbital electron populations 1.69964 1.06113 1.26836 1.50923 1.25000 0.94891 0.99436 0.95306 0.86454 0.79664 0.82854 0.78165 1.20577 1.21325 1.19794 1.21182 0.93613 0.90110 1.50343 0.91798 1.19584 0.90555 0.87320 0.95818 1.60581 1.20868 1.00364 1.49157 1.22588 0.95180 0.91006 1.01188 1.20583 0.90562 0.84502 0.90922 0.86112 1.86565 1.36455 1.95635 1.15615 1.23649 1.02118 0.97749 0.84802 1.21601 1.05659 0.96093 0.99633 1.21815 1.05783 1.00788 0.94923 1.24033 1.02137 0.89005 0.96211 1.83994 1.57911 1.29587 1.35238 0.92892 0.95401 0.99564 0.85293 0.91077 0.95057 0.77323 0.83414 0.83539 0.78203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 15 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 15 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 15 9 C 0.19 5.13 5.44 -4.98 -0.03 5.10 15 10 N -0.68 -14.62 6.36 -115.06 -0.73 -15.35 15 11 C 0.03 0.55 5.33 -3.82 -0.02 0.53 15 12 C 0.19 2.90 3.63 -27.88 -0.10 2.80 15 13 H 0.12 1.66 8.14 -51.93 -0.42 1.23 15 14 O -0.54 -8.55 13.18 -40.06 -0.53 -9.08 15 15 C -0.03 -0.45 6.20 -35.62 -0.22 -0.67 15 16 C -0.21 -2.69 10.81 -39.71 -0.43 -3.12 15 17 C -0.21 -2.40 10.91 -39.70 -0.43 -2.83 15 18 C -0.05 -0.51 12.09 29.42 0.36 -0.15 15 19 O -0.17 -2.35 10.52 0.86 0.01 -2.34 15 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 22 H -0.01 -0.37 8.14 -51.93 -0.42 -0.80 15 23 H 0.33 6.76 8.72 -39.29 -0.34 6.42 15 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 26 H 0.38 5.15 8.93 45.56 0.41 5.55 15 27 H 0.15 1.63 8.06 -52.48 -0.42 1.20 15 28 H 0.15 1.26 8.06 -52.49 -0.42 0.84 15 29 H 0.20 1.36 8.06 -52.49 -0.42 0.93 15 LS Contribution 262.05 15.07 3.95 3.95 Total: -1.00 -32.11 262.05 -5.74 -37.86 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.86 Total: 6.34 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.29 Total: -11.90 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.01 Total: -41.67 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.52 Total: -11.42 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.11 -5.74 -37.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393546472.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.008 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds