Wall clock time and date at job start Mon Mar 30 2020 03:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46759 * 2 1 4 4 O 1.42892 * 109.47227 * 120.00155 * 2 1 3 5 5 C 1.42896 * 114.00154 * 150.00106 * 4 2 1 6 6 C 1.50700 * 109.47383 * 179.97438 * 5 4 2 7 7 N 1.31402 * 125.15706 * 269.69667 * 6 5 4 8 8 N 1.40463 * 107.17794 * 179.90999 * 7 6 5 9 9 H 0.96998 * 127.00969 * 180.11677 * 8 7 6 10 10 C 1.37021 * 105.96888 * 0.34226 * 8 7 6 11 11 C 1.40371 * 126.31877 * 179.76926 * 10 8 7 12 12 H 1.07999 * 119.99668 * 354.29252 * 11 10 8 13 13 C 1.40271 * 120.00092 * 174.29401 * 11 10 8 14 14 N 1.30640 * 119.99833 * 6.01622 * 13 11 10 15 15 Si 1.86801 * 119.99662 * 186.01710 * 13 11 10 16 16 H 1.48496 * 109.47134 * 94.98206 * 15 13 11 17 17 H 1.48506 * 109.46757 * 214.98387 * 15 13 11 18 18 H 1.48497 * 109.47337 * 334.97974 * 15 13 11 19 19 N 1.32229 * 125.15973 * 89.99718 * 6 5 4 20 20 H 1.08996 * 109.47299 * 299.99995 * 1 2 3 21 21 H 1.09002 * 109.46965 * 60.00374 * 1 2 3 22 22 H 1.09005 * 109.46853 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47049 * 240.00460 * 2 1 3 24 24 H 1.09002 * 109.47532 * 299.99835 * 3 2 1 25 25 H 1.09000 * 109.46965 * 60.00408 * 3 2 1 26 26 H 1.09006 * 109.46664 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47388 * 299.99780 * 5 4 2 28 28 H 1.09003 * 109.47320 * 60.00406 * 5 4 2 29 29 H 0.97004 * 119.99529 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2660 -1.3244 0.9885 6 6 3.6699 -1.9978 2.2748 7 7 4.3840 -1.4423 3.2278 8 7 4.5340 -2.3992 4.2451 9 1 5.0100 -2.2906 5.0833 10 6 3.8751 -3.5189 3.8096 11 6 3.7605 -4.7367 4.4982 12 1 4.2941 -4.8850 5.4254 13 6 2.9530 -5.7610 3.9821 14 7 2.4019 -5.6279 2.8051 15 14 2.6657 -7.3152 4.9778 16 1 1.3998 -7.1858 5.7431 17 1 2.5735 -8.4801 4.0613 18 1 3.7957 -7.5152 5.9203 19 7 3.3644 -3.2390 2.6131 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 3.1809 -2.0706 0.1986 28 1 4.0200 -0.5873 0.7125 29 1 1.8432 -6.3361 2.4484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395446311.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:45 Heat of formation + Delta-G solvation = -4.531996 kcal Electronic energy + Delta-G solvation = -13670.411797 eV Core-core repulsion = 11207.954823 eV Total energy + Delta-G solvation = -2462.456975 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.73507 -39.23156 -35.59229 -34.05364 -32.52773 -31.56591 -28.54421 -28.00922 -27.18941 -22.65244 -22.18286 -20.98971 -19.12308 -18.08267 -17.69798 -16.66921 -16.05091 -15.97081 -15.34842 -14.90597 -14.48346 -13.71984 -13.60213 -13.49043 -13.04098 -12.92465 -12.76063 -12.52604 -12.34174 -12.13145 -11.81960 -11.61650 -11.29229 -10.52896 -10.36259 -9.92519 -9.87234 -8.51518 -6.75335 1.14864 1.45770 1.58701 1.62386 2.21430 2.31040 2.63080 3.07678 3.49388 3.84064 4.07321 4.11968 4.23045 4.31427 4.34322 4.77494 4.89323 4.91674 4.94144 4.96717 5.22834 5.29536 5.37511 5.62871 6.01197 6.25789 6.36015 6.41298 6.75822 7.23995 8.16824 8.44511 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.043362 B = 0.007589 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.567506 B = 3688.599421 C = 4178.356823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 C -0.167 4.167 4 O -0.404 6.404 5 C 0.179 3.821 6 C 0.196 3.804 7 N -0.410 5.410 8 N -0.559 5.559 9 H 0.428 0.572 10 C 0.378 3.622 11 C -0.475 4.475 12 H 0.106 0.894 13 C 0.035 3.965 14 N -0.768 5.768 15 Si 1.006 2.994 16 H -0.265 1.265 17 H -0.267 1.267 18 H -0.249 1.249 19 N -0.587 5.587 20 H 0.052 0.948 21 H 0.101 0.899 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 4.247 -4.171 6.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 C -0.225 4.225 4 O -0.323 6.323 5 C 0.101 3.899 6 C -0.088 4.088 7 N -0.248 5.248 8 N -0.280 5.280 9 H 0.272 0.728 10 C 0.129 3.871 11 C -0.516 4.516 12 H 0.124 0.876 13 C -0.189 4.189 14 N -0.392 5.392 15 Si 0.825 3.175 16 H -0.190 1.190 17 H -0.192 1.192 18 H -0.172 1.172 19 N -0.324 5.324 20 H 0.072 0.928 21 H 0.119 0.881 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.474 4.748 -4.511 7.001 hybrid contribution 0.410 -0.602 0.904 1.161 sum -2.064 4.145 -3.607 5.870 Atomic orbital electron populations 1.21864 0.92754 1.02311 1.03243 1.22438 0.95923 0.93163 0.87552 1.22257 1.01389 0.95663 1.03145 1.87983 1.36301 1.70282 1.37738 1.20206 0.85948 0.94234 0.89552 1.24157 0.96020 0.91722 0.96897 1.77494 1.30867 1.15384 1.01044 1.47956 1.50787 1.10477 1.18787 0.72759 1.21470 0.87505 0.88899 0.89267 1.18973 1.28932 0.95105 1.08629 0.87631 1.26991 0.93024 1.03177 0.95698 1.70103 1.20121 1.33118 1.15830 0.84848 0.79763 0.74751 0.78131 1.18966 1.19179 1.17219 1.71236 1.32590 1.14046 1.14561 0.92844 0.88080 0.93255 0.90882 0.88818 0.92933 0.92829 0.91309 0.90603 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.56 71.98 0.69 -3.00 15 2 C 0.07 1.95 3.34 30.60 0.10 2.05 15 3 C -0.17 -4.04 9.53 71.98 0.69 -3.35 15 4 O -0.40 -16.97 9.97 -148.98 -1.49 -18.45 15 5 C 0.18 7.74 6.37 71.24 0.45 8.20 15 6 C 0.20 10.66 7.71 138.74 1.07 11.73 15 7 N -0.41 -22.11 12.80 -51.54 -0.66 -22.77 15 8 N -0.56 -29.08 7.58 -55.50 -0.42 -29.50 15 9 H 0.43 18.76 8.96 -213.09 -1.91 16.85 15 10 C 0.38 21.75 7.70 133.83 1.03 22.78 15 11 C -0.48 -25.36 9.47 23.28 0.22 -25.13 15 12 H 0.11 5.01 7.86 -2.91 -0.02 4.99 15 13 C 0.03 1.74 5.49 85.36 0.47 2.21 15 14 N -0.77 -42.05 11.95 21.88 0.26 -41.79 15 15 Si 1.01 36.95 29.57 68.60 2.03 38.98 15 16 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 17 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15 18 H -0.25 -8.54 7.11 99.48 0.71 -7.84 15 19 N -0.59 -35.30 9.42 -185.90 -1.75 -37.05 15 20 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 21 H 0.10 1.81 8.14 -2.39 -0.02 1.79 15 22 H 0.05 1.38 8.14 -2.38 -0.02 1.36 15 23 H 0.07 1.91 7.79 -2.39 -0.02 1.89 15 24 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.05 1.32 7.87 -2.38 -0.02 1.30 15 27 H 0.07 2.84 8.08 -2.39 -0.02 2.82 15 28 H 0.08 2.85 7.87 -2.39 -0.02 2.83 15 29 H 0.29 13.99 8.29 -92.71 -0.77 13.22 15 Total: -1.00 -70.95 259.22 1.94 -69.01 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.75 Total: 26.10 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 4.72 Total: 15.48 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -2.57 Total: -131.11 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.49 Total: -18.45 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -70.95 1.94 -69.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395446311.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.477 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds