Wall clock time and date at job start Mon Mar 30 2020 03:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47109 * 2 1 4 4 N 1.46907 * 109.47163 * 119.99471 * 2 1 3 5 5 C 1.46894 * 110.99963 * 204.28175 * 4 2 1 6 6 H 1.09000 * 109.47516 * 326.36218 * 5 4 2 7 7 C 1.53006 * 109.47298 * 86.35978 * 5 4 2 8 8 C 1.50700 * 109.47103 * 206.35989 * 5 4 2 9 9 H 1.07999 * 120.00082 * 356.23636 * 8 5 4 10 10 C 1.37878 * 119.99917 * 176.23240 * 8 5 4 11 11 N 1.31513 * 120.00517 * 353.59358 * 10 8 5 12 12 Si 1.86807 * 119.99874 * 173.59431 * 10 8 5 13 13 H 1.48499 * 109.47289 * 179.97438 * 12 10 8 14 14 H 1.48504 * 109.46965 * 299.99955 * 12 10 8 15 15 H 1.48494 * 109.47201 * 59.99810 * 12 10 8 16 16 C 1.50697 * 109.47382 * 239.99626 * 2 1 3 17 17 N 1.34497 * 126.29047 * 104.71332 * 16 2 1 18 18 C 1.31129 * 105.61660 * 179.90421 * 17 16 2 19 19 O 1.33643 * 106.89520 * 0.35110 * 18 17 16 20 20 N 1.21299 * 109.81608 * 359.77285 * 19 18 17 21 21 H 1.09005 * 109.46728 * 184.87836 * 1 2 3 22 22 H 1.09000 * 109.47156 * 304.87543 * 1 2 3 23 23 H 1.08997 * 109.46878 * 64.88163 * 1 2 3 24 24 H 1.00903 * 110.99947 * 328.23356 * 4 2 1 25 25 H 1.09002 * 109.46975 * 184.60334 * 7 5 4 26 26 H 1.08997 * 109.46875 * 304.60619 * 7 5 4 27 27 H 1.08998 * 109.47042 * 64.60592 * 7 5 4 28 28 H 0.97000 * 119.99661 * 355.11864 * 11 10 8 29 29 H 1.07993 * 126.55071 * 180.12615 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 3.3737 -0.2438 1.5504 6 1 3.9267 -0.0110 0.6404 7 6 3.2855 1.0068 2.4275 8 6 4.0855 -1.3372 2.3048 9 1 3.5626 -2.2479 2.5568 10 6 5.4042 -1.1747 2.6732 11 7 6.0780 -0.1239 2.2594 12 14 6.2338 -2.4474 3.7603 13 1 7.6410 -2.0439 4.0094 14 1 5.5091 -2.5422 5.0530 15 1 6.2108 -3.7683 3.0820 16 6 2.0324 -0.7105 -1.2304 17 7 2.5574 -0.1318 -2.3252 18 6 2.8574 -1.1177 -3.1360 19 8 2.5027 -2.2492 -2.5196 20 7 2.0328 -1.9944 -1.4308 21 1 -0.3633 -1.0240 0.0874 22 1 -0.3633 0.5876 0.8431 23 1 -0.3633 0.4362 -0.9305 24 1 1.3851 -0.5668 1.9740 25 1 4.2887 1.3870 2.6202 26 1 2.7001 1.7698 1.9144 27 1 2.8048 0.7545 3.3727 28 1 5.6704 0.4998 1.6383 29 1 3.3025 -1.0315 -4.1162 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397901572.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:53 Heat of formation + Delta-G solvation = 39.197937 kcal Electronic energy + Delta-G solvation = -14172.862508 eV Core-core repulsion = 11712.301805 eV Total energy + Delta-G solvation = -2460.560702 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -46.53356 -38.95299 -36.72091 -35.26519 -33.19496 -31.90163 -28.71342 -26.98519 -25.86470 -24.97683 -22.82085 -22.01054 -19.13982 -18.91490 -18.70497 -17.05978 -16.11589 -16.02155 -15.90683 -15.49567 -14.51799 -13.91090 -13.79134 -13.43042 -13.24344 -13.03606 -12.78465 -12.60383 -12.54214 -12.42835 -12.11075 -12.02458 -11.94093 -11.00787 -10.71537 -10.50146 -9.29205 -8.60886 -6.32329 0.41887 1.31684 1.51411 1.59041 1.78878 2.30385 2.54646 2.78507 3.14356 3.16672 3.63268 3.96782 4.06642 4.35575 4.43128 4.56013 4.67729 4.69822 4.75100 4.83754 5.02578 5.08075 5.15018 5.37715 5.83427 6.09646 6.40838 6.60346 6.67722 7.37143 7.44908 8.74361 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.032685 B = 0.009857 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.464860 B = 2840.024261 C = 3223.991000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.165 3.835 3 H 0.057 0.943 4 N -0.673 5.673 5 C 0.210 3.790 6 H -0.016 1.016 7 C -0.160 4.160 8 C -0.591 4.591 9 H 0.044 0.956 10 C -0.031 4.031 11 N -0.935 5.935 12 Si 1.114 2.886 13 H -0.283 1.283 14 H -0.268 1.268 15 H -0.279 1.279 16 C 0.166 3.834 17 N -0.523 5.523 18 C 0.168 3.832 19 O 0.072 5.928 20 N -0.384 5.384 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.349 0.651 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.255 0.745 29 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 -0.166 -8.750 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.053 3.947 3 H 0.075 0.925 4 N -0.306 5.306 5 C 0.101 3.899 6 H 0.002 0.998 7 C -0.219 4.219 8 C -0.630 4.630 9 H 0.063 0.937 10 C -0.228 4.228 11 N -0.573 5.573 12 Si 0.936 3.064 13 H -0.208 1.208 14 H -0.193 1.193 15 H -0.204 1.204 16 C -0.107 4.107 17 N -0.257 5.257 18 C -0.071 4.071 19 O 0.012 5.988 20 N -0.090 5.090 21 H 0.082 0.918 22 H 0.107 0.893 23 H 0.093 0.907 24 H 0.169 0.831 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.334 0.666 Dipole moment (debyes) X Y Z Total from point charges -7.582 -1.206 -7.565 10.778 hybrid contribution -1.103 1.410 -0.821 1.970 sum -8.686 0.204 -8.385 12.074 Atomic orbital electron populations 1.21855 0.90130 1.03331 1.03885 1.19740 0.96603 0.93337 0.85050 0.92535 1.60340 1.04047 1.60013 1.06162 1.19047 0.86128 0.92400 0.92358 0.99842 1.22339 1.00583 0.98640 1.00358 1.22234 0.98671 1.03457 1.38623 0.93749 1.27177 0.95402 1.00872 0.99377 1.70925 1.40428 1.13961 1.32032 0.82974 0.75287 0.72942 0.75212 1.20829 1.19307 1.20447 1.26050 0.99966 0.87204 0.97525 1.71786 1.17718 1.33113 1.03047 1.31626 0.95390 0.78042 1.02082 1.85275 1.56016 1.36381 1.21105 1.74646 1.17276 1.18389 0.98667 0.91802 0.89281 0.90700 0.83088 0.94276 0.93849 0.93057 0.93436 0.66579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.16 71.98 0.66 -3.03 15 2 C 0.16 6.17 2.97 44.17 0.13 6.30 15 3 H 0.06 2.19 7.20 -2.39 -0.02 2.17 15 4 N -0.67 -29.40 6.03 -477.15 -2.87 -32.27 15 5 C 0.21 10.90 2.01 44.17 0.09 10.99 15 6 H -0.02 -0.97 7.02 -2.39 -0.02 -0.98 15 7 C -0.16 -7.52 8.81 71.98 0.63 -6.89 15 8 C -0.59 -34.52 8.79 25.60 0.23 -34.29 15 9 H 0.04 2.64 7.82 -2.91 -0.02 2.62 15 10 C -0.03 -1.79 5.26 84.66 0.45 -1.34 15 11 N -0.94 -57.86 12.89 21.45 0.28 -57.58 15 12 Si 1.11 51.82 29.91 68.60 2.05 53.88 15 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 16 C 0.17 6.50 6.68 138.46 0.93 7.42 15 17 N -0.52 -17.98 11.55 -315.38 -3.64 -21.62 15 18 C 0.17 4.12 13.40 130.51 1.75 5.87 15 19 O 0.07 2.28 11.31 74.84 0.85 3.12 15 20 N -0.38 -15.23 12.15 -60.38 -0.73 -15.97 15 21 H 0.06 1.82 8.14 -2.38 -0.02 1.81 15 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.35 13.68 8.10 -89.69 -0.73 12.95 15 25 H 0.04 2.03 6.22 -2.39 -0.01 2.01 15 26 H 0.04 1.76 7.48 -2.39 -0.02 1.74 15 27 H 0.05 2.29 8.14 -2.39 -0.02 2.28 15 28 H 0.26 16.05 5.99 -92.71 -0.56 15.49 15 29 H 0.32 2.75 8.06 -2.91 -0.02 2.73 15 Total: -1.00 -75.08 252.69 1.43 -73.65 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.65 Total: 11.77 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.86 Total: -14.97 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -6.98 Total: -127.44 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.85 Total: 3.12 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.05 Total: 53.88 kcal Total: -75.08 1.43 -73.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397901572.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.845 kcal (2) G-P(sol) polarization free energy of solvation -75.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds