Wall clock time and date at job start Mon Mar 30 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86797 * 120.00436 * 2 1 4 4 H 1.48500 * 109.47273 * 270.00387 * 3 2 1 5 5 H 1.48503 * 109.46923 * 30.00365 * 3 2 1 6 6 H 1.48500 * 109.47173 * 149.99927 * 3 2 1 7 7 C 1.40049 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99617 * 359.97438 * 7 2 1 10 10 O 1.21680 * 120.00410 * 0.02562 * 9 7 2 11 11 N 1.34786 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.49924 * 126.23389 * 180.02562 * 11 9 7 13 13 C 1.50927 * 101.87013 * 206.36841 * 12 11 9 14 14 H 1.08994 * 110.30141 * 67.69469 * 13 12 11 15 15 C 1.50161 * 126.45887 * 205.59929 * 13 12 11 16 16 O 1.45598 * 105.09583 * 141.73051 * 15 13 12 17 17 C 1.46106 * 108.94923 * 352.46349 * 16 15 13 18 18 C 1.50643 * 102.43391 * 334.45355 * 17 16 15 19 19 H 1.08997 * 110.19333 * 290.84649 * 18 17 16 20 20 C 1.49633 * 126.28632 * 359.96377 * 11 9 7 21 21 H 0.97008 * 119.99817 * 359.97438 * 1 2 3 22 22 H 1.09002 * 110.95648 * 88.21186 * 12 11 9 23 23 H 1.08995 * 110.95538 * 324.52051 * 12 11 9 24 24 H 1.08996 * 110.32175 * 260.63791 * 15 13 12 25 25 H 1.09001 * 110.31694 * 22.82979 * 15 13 12 26 26 H 1.09000 * 110.81134 * 216.21911 * 17 16 15 27 27 H 1.09003 * 110.81516 * 92.69566 * 17 16 15 28 28 H 1.08998 * 110.42923 * 68.84493 * 20 11 9 29 29 H 1.08998 * 110.52714 * 306.41513 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4383 2.6526 0.7001 6 1 3.5383 1.4400 0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0868 -1.2129 -0.0001 9 6 1.2749 -2.4805 -0.0005 10 8 0.0581 -2.4804 -0.0005 11 7 1.9488 -3.6478 -0.0005 12 6 1.3446 -5.0198 -0.0011 13 6 2.4303 -5.8374 0.6552 14 1 2.5360 -5.5545 1.7024 15 6 2.6713 -7.3087 0.4757 16 8 4.1196 -7.4560 0.4556 17 6 4.7312 -6.1293 0.4336 18 6 3.6523 -5.2852 -0.1931 19 1 3.5309 -5.5489 -1.2437 20 6 3.4361 -3.8116 -0.0013 21 1 -0.4850 0.8401 0.0004 22 1 1.1588 -5.3636 -1.0187 23 1 0.4287 -5.0427 0.5893 24 1 2.2456 -7.8665 1.3098 25 1 2.2430 -7.6502 -0.4667 26 1 5.6308 -6.1278 -0.1820 27 1 4.9520 -5.7878 1.4449 28 1 3.8552 -3.4866 0.9509 29 1 3.8819 -3.2514 -0.8232 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409428393.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:10 Heat of formation + Delta-G solvation = -81.588575 kcal Electronic energy + Delta-G solvation = -14159.740599 eV Core-core repulsion = 11661.649450 eV Total energy + Delta-G solvation = -2498.091150 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.68230 -39.03010 -36.80173 -34.68046 -32.19376 -31.51326 -28.75494 -27.45644 -26.01171 -21.87291 -21.71269 -21.07919 -18.68027 -17.96508 -17.58299 -16.51396 -16.16646 -15.96180 -15.62104 -15.03215 -14.91007 -14.25698 -13.73542 -13.51138 -13.11600 -13.00673 -12.74232 -12.56872 -12.48051 -12.35629 -12.01916 -11.90130 -11.25275 -10.96679 -10.56905 -9.92862 -9.24012 -8.33527 -6.90006 1.38706 1.40317 1.56018 2.19260 2.40491 2.55492 2.70705 2.86954 3.49716 3.72208 3.90711 4.18409 4.22742 4.35512 4.42103 4.53941 4.64644 4.73040 4.82302 4.89480 4.98564 5.08747 5.21138 5.28429 5.40817 5.71174 5.94250 6.30874 6.82375 7.37773 8.39050 8.62343 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.058669 B = 0.008069 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.138034 B = 3469.123765 C = 3878.780739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.552 3.448 10 O -0.633 6.633 11 N -0.664 5.664 12 C 0.133 3.867 13 C -0.148 4.148 14 H 0.084 0.916 15 C 0.080 3.920 16 O -0.403 6.403 17 C 0.081 3.919 18 C -0.146 4.146 19 H 0.091 0.909 20 C 0.142 3.858 21 H 0.276 0.724 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 -8.766 0.596 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.600 4.600 8 H 0.107 0.893 9 C 0.359 3.641 10 O -0.520 6.520 11 N -0.403 5.403 12 C 0.011 3.989 13 C -0.167 4.167 14 H 0.102 0.898 15 C 0.003 3.997 16 O -0.324 6.324 17 C 0.005 3.995 18 C -0.165 4.165 19 H 0.109 0.891 20 C 0.020 3.980 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.133 0.867 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.976 -8.793 0.598 13.312 hybrid contribution -0.416 0.997 -0.040 1.081 sum 9.560 -7.797 0.557 12.349 Atomic orbital electron populations 1.70193 1.09647 1.29104 1.36262 1.27042 0.95548 1.05061 0.91106 0.84986 0.78800 0.74786 0.79540 1.18478 1.19729 1.16997 1.21393 0.94668 0.89488 1.54472 0.89324 1.18464 0.86343 0.83215 0.76078 1.90553 1.16152 1.87199 1.58134 1.50057 1.06405 1.04405 1.79453 1.21123 0.95565 0.83023 0.99215 1.22914 0.96848 0.96505 1.00467 0.89792 1.22184 0.81501 0.92707 1.03271 1.89328 1.18626 1.28041 1.96376 1.22543 0.94932 0.80905 1.01144 1.22959 0.97154 0.95147 1.01271 0.89085 1.20875 0.81176 0.94401 1.01569 0.91446 0.92207 0.93291 0.88605 0.90102 0.86735 0.90503 0.91927 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.84 11.83 21.84 0.26 -50.58 15 2 C 0.03 1.54 5.50 85.31 0.47 2.01 15 3 Si 1.00 40.75 29.56 68.60 2.03 42.78 15 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 15 6 H -0.25 -9.27 7.11 99.48 0.71 -8.56 15 7 C -0.56 -32.29 9.09 24.83 0.23 -32.06 15 8 H 0.09 4.54 7.14 -2.91 -0.02 4.52 15 9 C 0.55 33.06 7.82 86.36 0.68 33.73 15 10 O -0.63 -43.79 15.36 -4.29 -0.07 -43.86 15 11 N -0.66 -31.07 3.44 -818.69 -2.81 -33.89 15 12 C 0.13 5.15 6.79 85.04 0.58 5.73 15 13 C -0.15 -4.26 3.03 -10.35 -0.03 -4.29 15 14 H 0.08 2.53 8.14 -2.39 -0.02 2.52 15 15 C 0.08 1.83 7.62 71.07 0.54 2.37 15 16 O -0.40 -9.91 11.60 -148.98 -1.73 -11.63 15 17 C 0.08 1.72 7.62 71.22 0.54 2.26 15 18 C -0.15 -3.93 2.98 -10.43 -0.03 -3.96 15 19 H 0.09 2.44 8.12 -2.39 -0.02 2.42 15 20 C 0.14 4.97 6.05 84.85 0.51 5.48 15 21 H 0.28 15.36 8.29 -92.70 -0.77 14.59 15 22 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.05 2.08 8.09 -2.39 -0.02 2.06 15 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.11 1.91 8.14 -2.39 -0.02 1.89 15 27 H 0.08 1.52 8.14 -2.39 -0.02 1.51 15 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 29 H 0.07 2.33 8.06 -2.39 -0.02 2.31 15 Total: -1.00 -76.53 246.28 2.30 -74.24 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.14 Total: 11.68 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 3.48 Total: 11.27 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.56 Total: -84.47 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -1.79 Total: -55.49 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -76.53 2.30 -74.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409428393.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.351 kcal (2) G-P(sol) polarization free energy of solvation -76.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds