Wall clock time and date at job start Mon Mar 30 2020 02:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86797 * 119.99764 * 2 1 4 4 H 1.48500 * 109.47222 * 95.01008 * 3 2 1 5 5 H 1.48501 * 109.47348 * 215.01362 * 3 2 1 6 6 H 1.48506 * 109.47259 * 335.00973 * 3 2 1 7 7 C 1.40043 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99997 * 173.78350 * 7 2 1 9 9 C 1.46367 * 120.00272 * 353.79150 * 7 2 1 10 10 O 1.21691 * 120.00301 * 5.22580 * 9 7 2 11 11 N 1.34784 * 120.00218 * 185.22391 * 9 7 2 12 12 C 1.47656 * 121.53407 * 359.71340 * 11 9 7 13 13 C 1.53772 * 107.25826 * 219.67294 * 12 11 9 14 14 H 1.08995 * 114.35157 * 160.74810 * 13 12 11 15 15 C 1.54093 * 111.17821 * 293.85236 * 13 12 11 16 16 C 1.54097 * 86.07726 * 80.53287 * 15 13 12 17 17 H 1.08997 * 115.56155 * 146.96428 * 16 15 13 18 18 C 1.47651 * 121.53573 * 179.97438 * 11 9 7 19 19 C 1.54276 * 85.75647 * 30.01163 * 16 15 13 20 20 O 1.42906 * 113.79532 * 215.76781 * 19 16 15 21 21 H 0.96999 * 119.99807 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.92968 * 339.15357 * 12 11 9 23 23 H 1.09004 * 109.93201 * 100.37089 * 12 11 9 24 24 H 1.09007 * 113.77534 * 326.25199 * 15 13 12 25 25 H 1.08997 * 113.88038 * 194.83934 * 15 13 12 26 26 H 1.09004 * 109.93363 * 259.63241 * 18 11 9 27 27 H 1.09005 * 109.93621 * 20.84418 * 18 11 9 28 28 H 1.08996 * 113.80158 * 84.27764 * 19 16 15 29 29 H 0.96699 * 114.00055 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5941 1.9853 1.3947 5 1 3.4813 1.4732 -0.8033 6 1 1.3891 2.6810 -0.5915 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2156 -0.1007 9 6 1.2817 -2.4766 0.1382 10 8 0.0649 -2.4811 0.1565 11 7 1.9614 -3.6357 0.2446 12 6 3.4373 -3.6704 0.2201 13 6 3.8510 -4.9012 -0.6037 14 1 4.8746 -4.8689 -0.9769 15 6 3.4422 -6.2076 0.1038 16 6 2.0350 -5.9540 -0.4707 17 1 1.4639 -6.8462 -0.7272 18 6 1.2643 -4.9296 0.3854 19 6 2.7625 -5.2554 -1.6380 20 8 2.0660 -4.1192 -2.1541 21 1 -0.4850 0.8400 -0.0004 22 1 3.8226 -2.7642 -0.2473 23 1 3.8239 -3.7593 1.2354 24 1 3.4893 -6.1517 1.1914 25 1 3.9271 -7.0974 -0.2978 26 1 1.2665 -5.2412 1.4300 27 1 0.2392 -4.8407 0.0255 28 1 3.1015 -5.9384 -2.4168 29 1 2.5196 -3.6788 -2.8858 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409433987.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:03 Heat of formation + Delta-G solvation = -67.204881 kcal Electronic energy + Delta-G solvation = -14732.348980 eV Core-core repulsion = 12234.881554 eV Total energy + Delta-G solvation = -2497.467426 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.76262 -38.56357 -36.07253 -34.65075 -33.95677 -31.03479 -28.42163 -25.90637 -25.42716 -23.29774 -21.48798 -19.17864 -18.56258 -18.27358 -17.57448 -16.30023 -15.95364 -15.50448 -15.28849 -15.00059 -14.44103 -13.98509 -13.66685 -13.28835 -13.08788 -12.89382 -12.70929 -12.39605 -12.29254 -12.00842 -11.63610 -11.49868 -11.01802 -10.87237 -10.42652 -9.68596 -8.88318 -8.22650 -6.74858 1.39788 1.43149 1.56481 2.26799 2.55200 2.93426 3.40320 3.59803 3.67324 3.72976 3.82964 4.08957 4.30700 4.61097 4.66661 4.70522 4.72967 4.87773 4.98768 5.03766 5.13752 5.27455 5.42504 5.45457 5.86161 6.19667 6.52071 6.94359 7.10155 7.60228 8.59247 8.78443 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.049284 B = 0.010566 C = 0.009848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.999713 B = 2649.307901 C = 2842.396740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.026 3.974 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.246 1.246 6 H -0.276 1.276 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.559 3.441 10 O -0.644 6.644 11 N -0.626 5.626 12 C 0.139 3.861 13 C -0.151 4.151 14 H 0.119 0.881 15 C -0.114 4.114 16 C -0.125 4.125 17 H 0.105 0.895 18 C 0.139 3.861 19 C 0.081 3.919 20 O -0.566 6.566 21 H 0.271 0.729 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.111 0.889 29 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.242 -9.339 -2.486 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.170 1.170 6 H -0.201 1.201 7 C -0.601 4.601 8 H 0.106 0.894 9 C 0.365 3.635 10 O -0.532 6.532 11 N -0.362 5.362 12 C 0.016 3.984 13 C -0.171 4.171 14 H 0.137 0.863 15 C -0.151 4.151 16 C -0.144 4.144 17 H 0.123 0.877 18 C 0.015 3.985 19 C 0.022 3.978 20 O -0.371 6.371 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.128 0.872 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.991 -9.420 -2.004 14.614 hybrid contribution 0.057 0.919 -0.318 0.974 sum 11.048 -8.501 -2.322 14.132 Atomic orbital electron populations 1.70242 1.09698 1.28566 1.37368 1.27022 0.95429 1.05000 0.91365 0.85064 0.78703 0.75116 0.79541 1.18681 1.16954 1.20077 1.21394 0.94973 0.90046 1.53727 0.89363 1.18386 0.86137 0.83871 0.75146 1.90514 1.16807 1.87327 1.58596 1.48055 1.06048 1.04949 1.77163 1.21477 0.80273 0.98288 0.98381 1.23772 1.00294 0.94942 0.98056 0.86332 1.23050 0.93858 0.97732 1.00494 1.23414 0.97419 0.97488 0.96041 0.87728 1.21183 0.95743 0.84358 0.97239 1.23735 0.92507 0.87999 0.93588 1.86876 1.50467 1.45123 1.54598 0.91938 0.90948 0.92882 0.91002 0.86286 0.93399 0.94821 0.87193 0.77749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -53.27 11.85 21.83 0.26 -53.01 15 2 C 0.03 1.49 5.49 85.30 0.47 1.96 15 3 Si 1.00 42.27 29.56 68.60 2.03 44.30 15 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 5 H -0.25 -9.54 7.11 99.48 0.71 -8.84 15 6 H -0.28 -11.34 7.11 99.48 0.71 -10.64 15 7 C -0.56 -33.25 8.85 24.82 0.22 -33.03 15 8 H 0.09 4.64 5.91 -2.91 -0.02 4.62 15 9 C 0.56 34.56 7.04 86.36 0.61 35.17 15 10 O -0.64 -46.59 14.68 -4.32 -0.06 -46.65 15 11 N -0.63 -30.44 1.76 -817.23 -1.44 -31.88 15 12 C 0.14 5.17 5.88 86.42 0.51 5.67 15 13 C -0.15 -4.00 5.03 -9.75 -0.05 -4.05 15 14 H 0.12 2.35 8.14 -2.39 -0.02 2.33 15 15 C -0.11 -2.55 7.28 31.28 0.23 -2.32 15 16 C -0.12 -3.77 5.04 -9.62 -0.05 -3.82 15 17 H 0.10 2.72 8.14 -2.39 -0.02 2.70 15 18 C 0.14 5.98 6.08 86.55 0.53 6.50 15 19 C 0.08 2.35 5.02 31.41 0.16 2.51 15 20 O -0.57 -22.45 10.79 -148.98 -1.61 -24.06 15 21 H 0.27 15.79 8.29 -92.71 -0.77 15.02 15 22 H 0.07 2.84 5.84 -2.39 -0.01 2.83 15 23 H 0.05 1.84 8.14 -2.38 -0.02 1.82 15 24 H 0.07 1.66 8.08 -2.38 -0.02 1.64 15 25 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 26 H 0.05 1.93 8.14 -2.38 -0.02 1.92 15 27 H 0.03 1.72 7.35 -2.38 -0.02 1.70 15 28 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 29 H 0.38 11.92 9.12 -74.06 -0.68 11.24 15 Total: -1.00 -84.46 239.11 2.29 -82.17 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.49 Total: 20.54 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 2.62 Total: 8.60 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.18 Total: -84.89 kcal Atomic # 8 Polarization: -69.04 SS G_CDS: -1.67 Total: -70.71 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -84.46 2.29 -82.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433987.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.961 kcal (2) G-P(sol) polarization free energy of solvation -84.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds