Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00069 * 2 1 4 4 H 1.08999 * 109.47262 * 245.00038 * 3 2 1 5 5 O 1.42898 * 109.47105 * 5.00396 * 3 2 1 6 6 C 1.50704 * 109.46792 * 124.99958 * 3 2 1 7 7 O 1.21284 * 120.00171 * 244.99631 * 6 3 2 8 8 N 1.34776 * 119.99842 * 65.00646 * 6 3 2 9 9 C 1.47584 * 134.49098 * 179.97438 * 8 6 3 10 10 C 1.53947 * 86.11565 * 155.35611 * 9 8 6 11 11 C 1.50697 * 113.73728 * 137.95278 * 10 9 8 12 12 H 1.08000 * 120.00521 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99910 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99824 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00457 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46931 * 89.99814 * 15 13 11 17 17 H 1.48496 * 109.47476 * 210.00446 * 15 13 11 18 18 H 1.48504 * 109.46989 * 330.00238 * 15 13 11 19 19 C 1.47576 * 134.49404 * 359.97438 * 8 6 3 20 20 H 1.07999 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.00164 * 179.97438 * 1 2 3 22 22 H 1.07997 * 120.00666 * 180.02562 * 2 1 3 23 23 H 0.96709 * 113.99875 * 59.99700 * 5 3 2 24 24 H 1.09001 * 113.76908 * 41.05531 * 9 8 6 25 25 H 1.08997 * 113.76763 * 269.65793 * 9 8 6 26 26 H 1.08999 * 113.74195 * 269.25717 * 10 9 8 27 27 H 0.97003 * 120.00094 * 180.02562 * 14 13 11 28 28 H 1.09003 * 113.77250 * 90.33955 * 19 8 6 29 29 H 1.08995 * 113.76824 * 318.94314 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6213 1.4027 -0.9314 5 8 1.1393 2.3887 0.1175 6 6 3.0204 1.3326 1.1639 7 8 2.8660 2.1385 2.0571 8 7 4.0479 0.4618 1.2122 9 6 5.1452 0.2087 2.1661 10 6 5.1705 -1.2212 1.5963 11 6 6.5598 -1.7606 1.3728 12 1 7.4200 -1.1521 1.6094 13 6 6.7327 -3.0313 0.8661 14 7 5.6852 -3.7722 0.5774 15 14 8.4546 -3.6998 0.5883 16 1 8.9199 -4.3945 1.8155 17 1 8.4367 -4.6578 -0.5462 18 1 9.3764 -2.5784 0.2747 19 6 4.5277 -0.6216 0.3325 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8500 -0.9352 -0.0004 23 1 0.6075 2.3662 0.9249 24 1 4.8394 0.2599 3.2111 25 1 6.0492 0.7808 1.9576 26 1 4.5236 -1.9177 2.1297 27 1 5.8068 -4.6663 0.2212 28 1 5.2503 -0.2935 -0.4147 29 1 3.7289 -1.2335 -0.0866 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598025590.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = -53.186395 kcal Electronic energy + Delta-G solvation = -13890.463523 eV Core-core repulsion = 11393.603984 eV Total energy + Delta-G solvation = -2496.859539 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.32192 -39.27075 -37.67894 -34.66753 -33.81664 -31.23883 -28.51884 -26.89895 -26.36829 -22.34187 -21.12111 -20.14855 -18.88589 -18.36824 -17.64397 -17.37948 -16.62005 -16.26806 -15.67314 -14.93853 -14.67286 -14.03191 -13.92981 -13.44603 -13.25284 -13.11009 -12.81505 -12.63387 -12.46189 -12.21856 -11.94276 -11.37160 -11.12388 -10.90268 -10.57183 -10.19660 -9.58668 -8.16250 -6.26857 1.10964 1.47533 1.50543 1.54344 1.59065 1.97298 2.46729 3.14923 3.21024 3.43949 3.76390 4.17939 4.28047 4.32290 4.43791 4.55452 4.65477 4.82614 4.89563 4.99219 5.05338 5.58039 5.60234 5.63049 5.82001 6.22830 6.42568 6.80335 6.82353 7.05326 7.43154 8.93390 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.050724 B = 0.007620 C = 0.006931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.873005 B = 3673.597754 C = 4038.870947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.212 4.212 3 C 0.136 3.864 4 H 0.141 0.859 5 O -0.542 6.542 6 C 0.498 3.502 7 O -0.594 6.594 8 N -0.633 5.633 9 C 0.104 3.896 10 C 0.024 3.976 11 C -0.531 4.531 12 H 0.064 0.936 13 C 0.024 3.976 14 N -0.916 5.916 15 Si 0.955 3.045 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.115 3.885 20 H 0.118 0.882 21 H 0.121 0.879 22 H 0.118 0.882 23 H 0.390 0.610 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.265 0.735 28 H 0.083 0.917 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 4.100 -3.093 8.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.231 4.231 3 C 0.074 3.926 4 H 0.158 0.842 5 O -0.349 6.349 6 C 0.288 3.712 7 O -0.477 6.477 8 N -0.367 5.367 9 C -0.018 4.018 10 C 0.004 3.996 11 C -0.569 4.569 12 H 0.082 0.918 13 C -0.176 4.176 14 N -0.554 5.554 15 Si 0.781 3.219 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.007 4.007 20 H 0.136 0.864 21 H 0.139 0.861 22 H 0.136 0.864 23 H 0.241 0.759 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.241 4.658 -3.288 8.454 hybrid contribution 0.718 -0.751 0.487 1.148 sum -5.523 3.907 -2.802 7.322 Atomic orbital electron populations 1.24101 0.95045 1.03911 0.95882 1.23401 0.97630 0.97318 1.04745 1.20651 0.88882 0.86776 0.96319 0.84176 1.86527 1.53599 1.47785 1.46971 1.21727 0.82314 0.78583 0.88572 1.90620 1.75745 1.39919 1.41418 1.50464 1.25837 1.33705 1.26706 1.23443 0.87950 0.96928 0.93467 1.20405 0.96256 0.90417 0.92474 1.21264 0.92111 1.00134 1.43413 0.91761 1.25694 1.00265 0.96922 0.94739 1.70034 1.30978 1.10388 1.44042 0.85593 0.80405 0.78290 0.77588 1.20505 1.21040 1.19037 1.23623 0.96553 0.84186 0.96361 0.86406 0.86053 0.86447 0.75920 0.92037 0.89819 0.94371 0.92618 0.89924 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 13.91 67.79 0.94 -2.36 15 2 C -0.21 -5.72 9.18 25.65 0.24 -5.49 15 3 C 0.14 4.08 3.72 29.10 0.11 4.19 15 4 H 0.14 3.85 8.14 -2.39 -0.02 3.83 15 5 O -0.54 -15.51 11.84 -129.99 -1.54 -17.05 15 6 C 0.50 19.04 7.38 87.66 0.65 19.69 15 7 O -0.59 -26.46 17.05 15.95 0.27 -26.18 15 8 N -0.63 -24.87 3.59 -836.80 -3.00 -27.87 15 9 C 0.10 4.27 8.39 86.48 0.73 4.99 15 10 C 0.02 1.08 3.62 -10.88 -0.04 1.04 15 11 C -0.53 -26.29 8.77 25.60 0.22 -26.07 15 12 H 0.06 3.10 7.81 -2.91 -0.02 3.08 15 13 C 0.02 1.22 5.46 84.66 0.46 1.68 15 14 N -0.92 -48.56 13.27 21.45 0.28 -48.28 15 15 Si 0.96 40.01 29.54 68.60 2.03 42.04 15 16 H -0.28 -11.62 7.11 99.48 0.71 -10.92 15 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 18 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 19 C 0.11 4.55 7.90 86.48 0.68 5.23 15 20 H 0.12 2.23 6.56 -2.91 -0.02 2.21 15 21 H 0.12 2.21 8.06 -2.91 -0.02 2.19 15 22 H 0.12 3.44 6.22 -2.91 -0.02 3.42 15 23 H 0.39 9.50 8.03 -74.05 -0.59 8.90 15 24 H 0.06 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.08 3.27 8.09 -2.39 -0.02 3.25 15 26 H 0.04 1.94 8.13 -2.39 -0.02 1.92 15 27 H 0.26 13.39 8.31 -92.71 -0.77 12.62 15 28 H 0.08 3.20 8.09 -2.39 -0.02 3.18 15 29 H 0.07 2.82 6.31 -2.39 -0.02 2.81 15 Total: -1.00 -59.23 256.84 2.59 -56.64 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.56 Total: 17.80 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 3.99 Total: 2.91 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -2.72 Total: -76.15 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.27 Total: -43.24 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -59.23 2.59 -56.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025590.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.450 kcal (2) G-P(sol) polarization free energy of solvation -59.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds