Wall clock time and date at job start Mon Mar 30 2020 03:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 120.00332 * 2 1 4 4 H 1.08001 * 120.00125 * 203.04362 * 3 2 1 5 5 C 1.38812 * 119.99812 * 23.04798 * 3 2 1 6 6 N 1.31621 * 119.99996 * 12.92920 * 5 3 2 7 7 Si 1.86800 * 120.00115 * 192.92395 * 5 3 2 8 8 H 1.48503 * 109.46684 * 59.99908 * 7 5 3 9 9 H 1.48493 * 109.47206 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47157 * 300.00388 * 7 5 3 11 11 C 1.46499 * 119.99641 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47458 * 90.00141 * 11 2 1 13 13 C 1.53001 * 109.47617 * 180.02562 * 12 11 2 14 14 C 1.50698 * 109.47268 * 180.02562 * 13 12 11 15 15 N 1.31127 * 126.55428 * 89.99875 * 14 13 12 16 16 C 1.34492 * 105.61780 * 180.02562 * 15 14 13 17 17 N 1.29952 * 107.42348 * 359.97438 * 16 15 14 18 18 O 1.21299 * 110.24836 * 359.70764 * 17 16 15 19 19 H 1.08996 * 109.47512 * 275.12419 * 1 2 3 20 20 H 1.09006 * 109.47257 * 35.11830 * 1 2 3 21 21 H 1.09002 * 109.47608 * 155.11626 * 1 2 3 22 22 H 0.97005 * 119.99800 * 180.02562 * 6 5 3 23 23 H 1.09002 * 109.47560 * 330.00101 * 11 2 1 24 24 H 1.09000 * 109.47365 * 209.99787 * 11 2 1 25 25 H 1.09002 * 109.46769 * 59.99475 * 12 11 2 26 26 H 1.09007 * 109.47038 * 300.00583 * 12 11 2 27 27 H 1.08998 * 109.46779 * 299.99846 * 13 12 11 28 28 H 1.09000 * 109.46990 * 59.99771 * 13 12 11 29 29 H 1.07998 * 126.28793 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2231 -0.3661 5 6 1.5388 2.3400 0.4707 6 7 0.4118 2.2597 1.1459 7 14 2.3160 4.0073 0.1458 8 1 2.4198 4.2280 -1.3191 9 1 1.4739 5.0718 0.7479 10 1 3.6722 4.0473 0.7496 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2168 -3.0353 -1.4439 14 6 3.4685 -3.4693 -2.8648 15 7 4.5114 -3.1680 -3.6004 16 6 4.3046 -3.7695 -4.7854 17 7 3.1678 -4.3947 -4.7113 18 8 2.6743 -4.2399 -3.6142 19 1 -0.3634 0.0918 1.0235 20 1 -0.3634 0.8406 -0.5912 21 1 -0.3634 -0.9322 -0.4324 22 1 -0.0153 3.0663 1.4745 23 1 1.6083 -2.0287 0.5129 24 1 3.1498 -1.1388 0.5133 25 1 3.0415 -0.9499 -1.9567 26 1 1.4999 -1.8398 -1.9572 27 1 4.1692 -2.9056 -0.9298 28 1 2.6273 -3.7949 -0.9305 29 1 4.9629 -3.7391 -5.6411 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687713376.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:16 Heat of formation + Delta-G solvation = 64.071582 kcal Electronic energy + Delta-G solvation = -13559.353988 eV Core-core repulsion = 11099.871888 eV Total energy + Delta-G solvation = -2459.482100 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.56614 -38.00191 -36.78859 -35.49217 -33.43058 -31.85688 -28.15539 -27.70903 -25.41327 -24.58336 -22.84668 -21.87708 -19.03500 -18.74820 -18.59325 -16.94028 -16.21183 -16.08120 -15.46705 -15.22945 -14.78449 -14.28840 -13.60409 -13.55574 -13.00855 -12.80188 -12.68068 -12.54412 -12.42471 -12.26759 -12.06758 -12.05589 -11.85899 -11.36887 -11.02048 -10.59270 -8.73565 -7.79780 -5.28655 0.15615 1.30150 1.47699 1.50016 1.56268 1.85972 2.53405 2.91611 3.29919 3.33517 3.72974 4.05257 4.16853 4.35881 4.61365 4.70690 4.82852 4.87199 4.90300 4.98621 5.02648 5.31061 5.33250 5.57369 5.67355 5.75926 6.37035 7.15579 7.19207 7.92887 8.34908 9.22894 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.047795 B = 0.006316 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.693149 B = 4432.181091 C = 4755.807684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.623 5.623 3 C -0.262 4.262 4 H 0.071 0.929 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.965 3.035 8 H -0.282 1.282 9 H -0.295 1.295 10 H -0.273 1.273 11 C 0.150 3.850 12 C -0.120 4.120 13 C -0.019 4.019 14 C 0.200 3.800 15 N -0.516 5.516 16 C 0.150 3.850 17 N -0.415 5.415 18 O 0.062 5.938 19 H 0.006 0.994 20 H 0.009 0.991 21 H 0.035 0.965 22 H 0.247 0.753 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -12.096 -6.584 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.347 5.347 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.793 3.207 8 H -0.209 1.209 9 H -0.221 1.221 10 H -0.199 1.199 11 C 0.024 3.976 12 C -0.162 4.162 13 C -0.058 4.058 14 C -0.019 4.019 15 N -0.250 5.250 16 C -0.143 4.143 17 N -0.126 5.126 18 O 0.008 5.992 19 H 0.025 0.975 20 H 0.028 0.972 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.142 0.858 28 H 0.151 0.849 29 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 5.852 -12.256 -7.249 15.395 hybrid contribution 0.114 1.277 -0.204 1.298 sum 5.966 -10.979 -7.454 14.549 Atomic orbital electron populations 1.20556 0.82958 0.95932 0.97676 1.44178 1.02172 1.02048 1.86254 1.19493 0.98457 0.87002 1.34274 0.91164 1.25770 0.98690 1.01817 0.98712 1.70221 1.20842 1.27572 1.39999 0.85374 0.77853 0.79788 0.77646 1.20868 1.22128 1.19872 1.20908 0.96352 0.86873 0.93498 1.22058 0.99172 0.94413 1.00511 1.20423 1.04943 0.98414 0.82044 1.29470 0.84599 0.88861 0.99006 1.72030 1.24665 1.24493 1.03815 1.28181 0.94100 0.93561 0.98470 1.74643 1.13376 1.23874 1.00676 1.85267 1.43739 1.52699 1.17495 0.97523 0.97245 0.94627 0.94355 0.91717 0.92816 0.93827 0.92694 0.85816 0.84947 0.72490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.47 8.98 127.77 1.15 9.61 15 2 N -0.62 -30.43 2.92 -726.95 -2.12 -32.55 15 3 C -0.26 -14.25 9.65 84.03 0.81 -13.44 15 4 H 0.07 3.70 7.86 -2.91 -0.02 3.68 15 5 C -0.06 -3.09 5.10 84.86 0.43 -2.66 15 6 N -0.94 -55.78 10.71 21.65 0.23 -55.55 15 7 Si 0.96 45.23 29.57 68.60 2.03 47.26 15 8 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 9 H -0.30 -13.92 7.11 99.48 0.71 -13.22 15 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 15 11 C 0.15 5.35 5.64 86.38 0.49 5.84 15 12 C -0.12 -3.61 5.52 30.59 0.17 -3.44 15 13 C -0.02 -0.40 5.84 29.85 0.17 -0.22 15 14 C 0.20 5.02 7.77 88.38 0.69 5.70 15 15 N -0.52 -13.85 11.55 -315.46 -3.64 -17.50 15 16 C 0.15 3.45 13.11 180.60 2.37 5.82 15 17 N -0.41 -10.99 12.16 -70.51 -0.86 -11.85 15 18 O 0.06 1.64 11.31 74.82 0.85 2.48 15 19 H 0.01 0.35 7.34 -2.39 -0.02 0.33 15 20 H 0.01 0.47 7.34 -2.38 -0.02 0.46 15 21 H 0.04 1.43 8.03 -2.39 -0.02 1.41 15 22 H 0.25 14.32 8.31 -92.70 -0.77 13.55 15 23 H 0.06 2.01 8.07 -2.39 -0.02 1.99 15 24 H 0.05 1.89 8.04 -2.39 -0.02 1.87 15 25 H 0.04 1.53 8.14 -2.39 -0.02 1.52 15 26 H 0.05 1.72 8.14 -2.38 -0.02 1.70 15 27 H 0.12 2.29 8.14 -2.39 -0.02 2.27 15 28 H 0.13 1.96 8.14 -2.39 -0.02 1.94 15 29 H 0.26 3.54 8.06 -2.91 -0.02 3.51 15 Total: -1.00 -67.21 256.78 3.89 -63.32 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: 1.13 Total: -2.83 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 6.28 Total: 7.21 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.39 Total: -117.45 kcal Atomic # 8 Polarization: 1.64 SS G_CDS: 0.85 Total: 2.48 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -67.21 3.89 -63.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713376.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.394 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds