Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37097 * 119.99385 * 2 1 4 4 H 1.08010 * 119.99607 * 157.57895 * 3 2 1 5 5 C 1.38944 * 120.00840 * 337.57587 * 3 2 1 6 6 N 1.31414 * 119.99876 * 330.38532 * 5 3 2 7 7 Si 1.86799 * 120.00610 * 150.37830 * 5 3 2 8 8 H 1.48507 * 109.47012 * 270.00811 * 7 5 3 9 9 H 1.48497 * 109.46740 * 30.00225 * 7 5 3 10 10 H 1.48495 * 109.47223 * 150.00217 * 7 5 3 11 11 C 1.34770 * 120.00140 * 179.97438 * 2 1 3 12 12 O 1.21293 * 120.00263 * 184.58619 * 11 2 1 13 13 C 1.50700 * 120.00231 * 4.58233 * 11 2 1 14 14 C 1.52998 * 119.80819 * 271.42687 * 13 11 2 15 15 C 1.54511 * 122.36798 * 199.04303 * 13 11 2 16 16 H 1.08998 * 122.36396 * 359.45711 * 15 13 11 17 17 C 1.54482 * 104.06293 * 223.21673 * 15 13 11 18 18 O 1.44422 * 104.80358 * 336.02432 * 17 15 13 19 19 C 1.44428 * 105.27804 * 40.50971 * 18 17 15 20 20 H 1.09003 * 109.47139 * 92.39567 * 1 2 3 21 21 H 1.09000 * 109.47416 * 212.39270 * 1 2 3 22 22 H 1.08993 * 109.47866 * 332.39553 * 1 2 3 23 23 H 0.97006 * 119.99465 * 354.55228 * 6 5 3 24 24 H 1.08995 * 117.43492 * 355.36215 * 14 13 11 25 25 H 1.09001 * 117.43457 * 140.00899 * 14 13 11 26 26 H 1.08995 * 110.37004 * 217.18871 * 17 15 13 27 27 H 1.08997 * 110.45778 * 94.90143 * 17 15 13 28 28 H 1.08999 * 110.37380 * 200.65961 * 19 18 17 29 29 H 1.08997 * 110.37111 * 78.31361 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1692 1.2228 0.3568 5 6 1.5345 2.3452 -0.4590 6 7 0.6046 2.2721 -1.3846 7 14 2.0281 4.0058 0.2398 8 1 1.1802 4.3187 1.4182 9 1 3.4538 3.9649 0.6528 10 1 1.8425 5.0536 -0.7959 11 6 2.1389 -1.1671 0.0005 12 8 3.3489 -1.1688 0.0845 13 6 1.3891 -2.4702 -0.1032 14 6 0.8903 -3.1638 1.1661 15 6 2.0147 -3.8200 0.3139 16 1 3.0326 -3.8981 0.6959 17 6 1.5997 -4.7906 -0.8140 18 8 0.4099 -4.2048 -1.3857 19 6 0.6701 -2.7850 -1.4338 20 1 -0.3633 -0.0430 -1.0268 21 1 -0.3634 -0.8677 0.5505 22 1 -0.3634 0.9106 0.4761 23 1 0.4036 1.4207 -1.8039 24 1 1.1668 -2.7201 2.1225 25 1 -0.0964 -3.6257 1.1313 26 1 1.3783 -5.7760 -0.4042 27 1 2.3866 -4.8608 -1.5649 28 1 -0.2655 -2.2297 -1.5001 29 1 1.3151 -2.5458 -2.2793 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689148379.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -36.122884 kcal Electronic energy + Delta-G solvation = -14441.162395 eV Core-core repulsion = 11945.042786 eV Total energy + Delta-G solvation = -2496.119610 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33394 -37.95528 -35.05176 -33.90558 -31.53785 -28.66346 -26.49107 -25.62179 -24.56476 -21.74411 -20.57176 -18.67893 -17.50289 -16.59893 -15.72969 -15.06727 -14.91226 -14.62669 -13.79896 -13.78377 -13.44059 -12.70090 -12.42712 -11.92340 -11.83020 -11.40926 -11.27562 -11.17489 -10.84518 -10.23813 -10.13897 -10.08081 -9.89752 -9.34049 -8.97852 -8.42732 -7.90365 -6.69869 -3.91028 3.24868 3.33972 3.53558 3.54126 3.78912 3.97112 4.21611 4.61851 4.76420 4.91407 4.97012 5.23521 5.34219 5.59278 5.59981 5.73866 5.83358 5.90923 5.98520 6.04372 6.13626 6.30068 6.34300 6.59340 6.83377 7.83517 8.06736 8.57399 8.86379 9.36908 9.83221 10.56206 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.058798 B = 0.009098 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.091229 B = 3076.958812 C = 3264.424674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.443 5.443 3 C -0.408 4.408 4 H 0.093 0.907 5 C 0.010 3.990 6 N -0.872 5.872 7 Si 1.076 2.924 8 H -0.284 1.284 9 H -0.283 1.283 10 H -0.283 1.283 11 C 0.485 3.515 12 O -0.580 6.580 13 C -0.182 4.182 14 C -0.119 4.119 15 C -0.179 4.179 16 H 0.127 0.873 17 C 0.074 3.926 18 O -0.376 6.376 19 C 0.087 3.913 20 H 0.044 0.956 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.276 0.724 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -8.549 2.360 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.162 5.162 3 C -0.535 4.535 4 H 0.111 0.889 5 C -0.197 4.197 6 N -0.506 5.506 7 Si 0.902 3.098 8 H -0.210 1.210 9 H -0.208 1.208 10 H -0.209 1.209 11 C 0.273 3.727 12 O -0.465 6.465 13 C -0.186 4.186 14 C -0.156 4.156 15 C -0.198 4.198 16 H 0.145 0.855 17 C -0.003 4.003 18 O -0.295 6.295 19 C 0.010 3.990 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.906 -6.999 2.246 7.904 hybrid contribution 0.472 -1.469 0.004 1.543 sum -2.434 -8.468 2.251 9.094 Atomic orbital electron populations 1.21703 0.82322 1.01501 1.00451 1.43543 1.04648 1.05104 1.62859 1.20449 1.01652 0.85023 1.46398 0.88909 1.26379 0.95934 1.03186 0.94248 1.70769 1.32232 1.29402 1.18242 0.83393 0.76258 0.73972 0.76140 1.21002 1.20822 1.20898 1.18611 0.86824 0.82975 0.84329 1.90515 1.13921 1.86613 1.55405 1.23158 1.04608 0.94473 0.96390 1.23235 0.98002 1.00437 0.93941 1.24439 0.99859 0.93957 1.01525 0.85494 1.22908 0.87894 0.96535 0.92936 1.89099 1.37156 1.19466 1.83730 1.22825 1.00388 0.81475 0.94287 0.93712 0.93195 0.90959 0.91296 0.87789 0.88260 0.88849 0.91406 0.88434 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.82 7.63 59.85 0.46 2.28 15 2 N -0.44 -11.35 2.90 -122.19 -0.35 -11.70 15 3 C -0.41 -11.56 9.12 -14.94 -0.14 -11.70 15 4 H 0.09 2.82 7.50 -52.48 -0.39 2.43 15 5 C 0.01 0.27 4.62 -17.47 -0.08 0.19 15 6 N -0.87 -23.97 12.69 55.50 0.70 -23.27 15 7 Si 1.08 23.76 30.01 -169.99 -5.10 18.66 15 8 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 11 C 0.48 12.08 7.23 -10.99 -0.08 12.00 15 12 O -0.58 -16.68 16.60 5.55 0.09 -16.58 15 13 C -0.18 -3.50 1.33 -154.09 -0.20 -3.71 15 14 C -0.12 -1.89 9.31 -25.35 -0.24 -2.13 15 15 C -0.18 -2.93 7.10 -87.66 -0.62 -3.55 15 16 H 0.13 2.11 8.14 -51.93 -0.42 1.69 15 17 C 0.07 1.04 7.54 37.94 0.29 1.33 15 18 O -0.38 -6.11 11.32 -35.23 -0.40 -6.51 15 19 C 0.09 1.52 6.95 37.94 0.26 1.79 15 20 H 0.04 0.94 6.41 -51.93 -0.33 0.61 15 21 H 0.05 0.92 6.64 -51.93 -0.34 0.57 15 22 H 0.07 1.63 7.23 -51.93 -0.38 1.26 15 23 H 0.28 7.54 6.30 -40.82 -0.26 7.28 15 24 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 25 H 0.10 1.40 8.07 -51.93 -0.42 0.98 15 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 28 H 0.10 1.60 7.14 -51.93 -0.37 1.23 15 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 15 LS Contribution 245.68 15.07 3.70 3.70 Total: -1.00 -31.93 245.68 -5.11 -37.05 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -3.40 Total: 2.16 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -0.35 Total: -3.50 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.35 Total: -34.97 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.31 Total: -23.09 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.10 Total: 18.66 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.93 -5.11 -37.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689148379.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.923 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds