Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37097 * 119.99385 * 2 1 4 4 H 1.08010 * 119.99607 * 157.57895 * 3 2 1 5 5 C 1.38944 * 120.00840 * 337.57587 * 3 2 1 6 6 N 1.31414 * 119.99876 * 330.38532 * 5 3 2 7 7 Si 1.86799 * 120.00610 * 150.37830 * 5 3 2 8 8 H 1.48507 * 109.47012 * 270.00811 * 7 5 3 9 9 H 1.48497 * 109.46740 * 30.00225 * 7 5 3 10 10 H 1.48495 * 109.47223 * 150.00217 * 7 5 3 11 11 C 1.34770 * 120.00140 * 179.97438 * 2 1 3 12 12 O 1.21293 * 120.00263 * 184.58619 * 11 2 1 13 13 C 1.50700 * 120.00231 * 4.58233 * 11 2 1 14 14 C 1.52998 * 119.80819 * 271.42687 * 13 11 2 15 15 C 1.54511 * 122.36798 * 199.04303 * 13 11 2 16 16 H 1.08998 * 122.36396 * 359.45711 * 15 13 11 17 17 C 1.54482 * 104.06293 * 223.21673 * 15 13 11 18 18 O 1.44422 * 104.80358 * 336.02432 * 17 15 13 19 19 C 1.44428 * 105.27804 * 40.50971 * 18 17 15 20 20 H 1.09003 * 109.47139 * 92.39567 * 1 2 3 21 21 H 1.09000 * 109.47416 * 212.39270 * 1 2 3 22 22 H 1.08993 * 109.47866 * 332.39553 * 1 2 3 23 23 H 0.97006 * 119.99465 * 354.55228 * 6 5 3 24 24 H 1.08995 * 117.43492 * 355.36215 * 14 13 11 25 25 H 1.09001 * 117.43457 * 140.00899 * 14 13 11 26 26 H 1.08995 * 110.37004 * 217.18871 * 17 15 13 27 27 H 1.08997 * 110.45778 * 94.90143 * 17 15 13 28 28 H 1.08999 * 110.37380 * 200.65961 * 19 18 17 29 29 H 1.08997 * 110.37111 * 78.31361 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1692 1.2228 0.3568 5 6 1.5345 2.3452 -0.4590 6 7 0.6046 2.2721 -1.3846 7 14 2.0281 4.0058 0.2398 8 1 1.1802 4.3187 1.4182 9 1 3.4538 3.9649 0.6528 10 1 1.8425 5.0536 -0.7959 11 6 2.1389 -1.1671 0.0005 12 8 3.3489 -1.1688 0.0845 13 6 1.3891 -2.4702 -0.1032 14 6 0.8903 -3.1638 1.1661 15 6 2.0147 -3.8200 0.3139 16 1 3.0326 -3.8981 0.6959 17 6 1.5997 -4.7906 -0.8140 18 8 0.4099 -4.2048 -1.3857 19 6 0.6701 -2.7850 -1.4338 20 1 -0.3633 -0.0430 -1.0268 21 1 -0.3634 -0.8677 0.5505 22 1 -0.3634 0.9106 0.4761 23 1 0.4036 1.4207 -1.8039 24 1 1.1668 -2.7201 2.1225 25 1 -0.0964 -3.6257 1.1313 26 1 1.3783 -5.7760 -0.4042 27 1 2.3866 -4.8608 -1.5649 28 1 -0.2655 -2.2297 -1.5001 29 1 1.3151 -2.5458 -2.2793 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689148379.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -58.302138 kcal Electronic energy + Delta-G solvation = -14442.124160 eV Core-core repulsion = 11945.042786 eV Total energy + Delta-G solvation = -2497.081374 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.79282 -39.76211 -37.05297 -35.32432 -33.57319 -30.02121 -28.35187 -26.92371 -26.46607 -23.51965 -21.83733 -20.40853 -19.42214 -18.23304 -17.16109 -16.74115 -16.49827 -16.30539 -15.59738 -15.47124 -15.05318 -14.09086 -13.80737 -13.76394 -13.61457 -13.16115 -12.91496 -12.59928 -12.51178 -12.06090 -11.95938 -11.55978 -11.24925 -10.97011 -10.63261 -10.37878 -9.95662 -8.85335 -6.08970 1.44354 1.53449 1.81726 1.83494 2.26118 2.38199 2.66982 2.85871 3.02863 3.46412 3.54033 3.76767 3.90016 4.12307 4.33727 4.38721 4.54313 4.58671 4.60679 4.64945 4.74790 4.78502 4.83638 5.04759 5.56518 5.73134 5.84580 6.52916 6.81155 7.32545 7.82870 8.40575 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.058798 B = 0.009098 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.091229 B = 3076.958812 C = 3264.424674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.458 5.458 3 C -0.442 4.442 4 H 0.058 0.942 5 C -0.017 4.017 6 N -0.880 5.880 7 Si 1.124 2.876 8 H -0.262 1.262 9 H -0.281 1.281 10 H -0.276 1.276 11 C 0.478 3.522 12 O -0.632 6.632 13 C -0.213 4.213 14 C -0.094 4.094 15 C -0.169 4.169 16 H 0.119 0.881 17 C 0.075 3.925 18 O -0.373 6.373 19 C 0.097 3.903 20 H 0.048 0.952 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.269 0.731 24 H 0.102 0.898 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 -9.551 2.870 10.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.176 5.176 3 C -0.569 4.569 4 H 0.076 0.924 5 C -0.221 4.221 6 N -0.513 5.513 7 Si 0.944 3.056 8 H -0.187 1.187 9 H -0.207 1.207 10 H -0.201 1.201 11 C 0.268 3.732 12 O -0.520 6.520 13 C -0.217 4.217 14 C -0.131 4.131 15 C -0.188 4.188 16 H 0.137 0.863 17 C -0.001 4.001 18 O -0.292 6.292 19 C 0.019 3.981 20 H 0.066 0.934 21 H 0.102 0.898 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.147 0.853 26 H 0.150 0.850 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.358 -8.025 2.751 9.537 hybrid contribution 0.968 -1.229 -0.164 1.572 sum -3.390 -9.253 2.587 10.189 Atomic orbital electron populations 1.21729 0.79921 1.02334 1.01038 1.43769 1.06232 1.04760 1.62801 1.20368 1.01130 0.87183 1.48229 0.92422 1.27710 0.95038 1.05921 0.93439 1.70868 1.32719 1.29053 1.18685 0.82806 0.76369 0.70131 0.76324 1.18698 1.20695 1.20145 1.19537 0.86644 0.84708 0.82361 1.90465 1.16461 1.87803 1.57297 1.22967 1.06956 0.92614 0.99120 1.23359 0.99235 0.98357 0.92154 1.24650 0.99983 0.92410 1.01749 0.86274 1.23124 0.87505 0.97334 0.92141 1.89107 1.37909 1.18343 1.83843 1.22645 1.00223 0.82554 0.92644 0.93376 0.89760 0.92321 0.92066 0.87929 0.85296 0.85031 0.90889 0.87469 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.95 7.63 127.77 0.97 4.93 15 2 N -0.46 -23.86 2.90 -658.90 -1.91 -25.77 15 3 C -0.44 -25.81 9.12 84.04 0.77 -25.05 15 4 H 0.06 3.70 7.50 -2.91 -0.02 3.68 15 5 C -0.02 -0.90 4.62 84.92 0.39 -0.51 15 6 N -0.88 -48.35 12.69 21.66 0.27 -48.07 15 7 Si 1.12 47.76 30.01 68.60 2.06 49.82 15 8 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 9 H -0.28 -11.80 7.11 99.48 0.71 -11.10 15 10 H -0.28 -11.39 7.11 99.48 0.71 -10.68 15 11 C 0.48 24.24 7.23 87.66 0.63 24.88 15 12 O -0.63 -37.79 16.60 -3.07 -0.05 -37.84 15 13 C -0.21 -7.92 1.33 -51.91 -0.07 -7.99 15 14 C -0.09 -2.72 9.31 31.49 0.29 -2.43 15 15 C -0.17 -5.16 7.10 -8.88 -0.06 -5.22 15 16 H 0.12 3.83 8.14 -2.39 -0.02 3.81 15 17 C 0.07 1.87 7.54 72.49 0.55 2.41 15 18 O -0.37 -10.92 11.32 -148.98 -1.69 -12.61 15 19 C 0.10 3.21 6.95 72.49 0.50 3.72 15 20 H 0.05 1.99 6.41 -2.39 -0.02 1.98 15 21 H 0.08 2.93 6.64 -2.39 -0.02 2.92 15 22 H 0.06 2.62 7.23 -2.39 -0.02 2.60 15 23 H 0.27 14.81 6.30 -92.70 -0.58 14.22 15 24 H 0.10 3.01 8.14 -2.39 -0.02 2.99 15 25 H 0.13 3.02 8.07 -2.39 -0.02 3.00 15 26 H 0.13 2.34 8.14 -2.39 -0.02 2.32 15 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 28 H 0.11 3.31 7.14 -2.39 -0.02 3.29 15 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -70.56 245.68 3.99 -66.57 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.33 Total: 13.17 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 3.98 Total: -5.25 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -1.64 Total: -73.85 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -1.74 Total: -50.45 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.06 Total: 49.82 kcal Total: -70.56 3.99 -66.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689148379.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.265 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds