Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37097 * 119.99949 * 2 1 4 4 H 1.07999 * 119.99727 * 203.55672 * 3 2 1 5 5 C 1.38952 * 119.99840 * 23.55145 * 3 2 1 6 6 N 1.31410 * 120.00061 * 10.98214 * 5 3 2 7 7 Si 1.86798 * 119.99856 * 190.98060 * 5 3 2 8 8 H 1.48501 * 109.47418 * 90.00314 * 7 5 3 9 9 H 1.48501 * 109.47167 * 210.00241 * 7 5 3 10 10 H 1.48508 * 109.47290 * 330.00348 * 7 5 3 11 11 C 1.34774 * 119.99984 * 180.02562 * 2 1 3 12 12 O 1.21300 * 119.99911 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00376 * 359.97438 * 11 2 1 14 14 C 1.53143 * 120.39647 * 112.36206 * 13 11 2 15 15 C 1.53000 * 60.74850 * 112.14267 * 14 13 11 16 16 H 1.08994 * 119.81023 * 246.70597 * 15 14 13 17 17 C 1.54476 * 118.06422 * 90.43868 * 15 14 13 18 18 O 1.44430 * 104.80828 * 273.17342 * 17 15 14 19 19 C 1.44429 * 105.27090 * 40.50992 * 18 17 15 20 20 H 1.09002 * 109.46326 * 270.84810 * 1 2 3 21 21 H 1.08996 * 109.47236 * 30.84276 * 1 2 3 22 22 H 1.08992 * 109.46991 * 150.84944 * 1 2 3 23 23 H 0.96997 * 119.99652 * 179.97438 * 6 5 3 24 24 H 1.09002 * 117.37578 * 4.40644 * 14 13 11 25 25 H 1.09006 * 117.38196 * 219.87868 * 14 13 11 26 26 H 1.09000 * 110.37449 * 154.34101 * 17 15 14 27 27 H 1.09003 * 110.37577 * 32.00460 * 17 15 14 28 28 H 1.09005 * 110.36520 * 78.32329 * 19 18 17 29 29 H 1.08992 * 110.37048 * 200.54598 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1630 1.2262 -0.3738 5 6 1.5425 2.3405 0.4808 6 7 0.4028 2.2606 1.1301 7 14 2.3453 4.0044 0.2043 8 1 1.8610 4.5811 -1.0756 9 1 1.9931 4.9159 1.3225 10 1 3.8200 3.8390 0.1461 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 6 1.4329 -3.3944 -1.2223 15 6 2.0995 -3.8435 0.0795 16 1 3.1833 -3.9498 0.1247 17 6 1.2527 -4.6499 1.0890 18 8 0.5909 -3.6517 1.8962 19 6 0.1929 -2.6168 0.9707 20 1 -0.3632 0.0152 1.0276 21 1 -0.3633 0.8823 -0.5268 22 1 -0.3633 -0.8974 -0.5005 23 1 -0.0213 3.0656 1.4661 24 1 2.0849 -3.1024 -2.0456 25 1 0.5072 -3.8927 -1.5105 26 1 1.8952 -5.2747 1.7095 27 1 0.5186 -5.2619 0.5650 28 1 -0.7038 -2.9171 0.4285 29 1 0.0194 -1.6803 1.5005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689148381.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = -53.637201 kcal Electronic energy + Delta-G solvation = -14451.159454 eV Core-core repulsion = 11954.280367 eV Total energy + Delta-G solvation = -2496.879087 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.73658 -39.53090 -36.83078 -35.46796 -33.71715 -30.14092 -28.08945 -26.82667 -26.23180 -23.58506 -22.06145 -20.16102 -19.01283 -17.92589 -17.28008 -16.73137 -16.36864 -15.90634 -15.69333 -15.52313 -14.73346 -14.21754 -13.88426 -13.58317 -13.24702 -13.08984 -12.78138 -12.58947 -12.47507 -12.17770 -12.11228 -11.59203 -11.16540 -11.04358 -10.64642 -10.28326 -9.74167 -8.38002 -6.05073 1.34197 1.38660 1.51401 1.80405 2.23751 2.50785 2.87227 3.05348 3.14637 3.49775 3.55955 3.91701 4.07071 4.09002 4.42905 4.52794 4.68721 4.69631 4.76818 4.80465 4.97399 4.99519 5.15013 5.34347 5.39513 5.75107 6.04539 6.43197 7.10135 7.40084 7.96610 8.64487 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.054959 B = 0.009375 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.343839 B = 2985.872133 C = 3214.516320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.455 5.455 3 C -0.350 4.350 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.895 5.895 7 Si 0.994 3.006 8 H -0.262 1.262 9 H -0.271 1.271 10 H -0.278 1.278 11 C 0.475 3.525 12 O -0.640 6.640 13 C -0.216 4.216 14 C -0.084 4.084 15 C -0.167 4.167 16 H 0.109 0.891 17 C 0.076 3.924 18 O -0.398 6.398 19 C 0.087 3.913 20 H 0.049 0.951 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.276 0.724 24 H 0.097 0.903 25 H 0.143 0.857 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 -9.645 -3.416 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.172 5.172 3 C -0.478 4.478 4 H 0.087 0.913 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.817 3.183 8 H -0.187 1.187 9 H -0.196 1.196 10 H -0.203 1.203 11 C 0.265 3.735 12 O -0.529 6.529 13 C -0.220 4.220 14 C -0.121 4.121 15 C -0.186 4.186 16 H 0.127 0.873 17 C 0.000 4.000 18 O -0.317 6.317 19 C 0.011 3.989 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.161 0.839 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.900 -9.470 -3.065 11.094 hybrid contribution 0.780 1.272 -0.058 1.493 sum -4.121 -8.198 -3.122 9.692 Atomic orbital electron populations 1.21586 0.79174 1.00270 1.00931 1.43721 1.06940 1.04305 1.62210 1.19639 0.99939 0.85985 1.42271 0.91294 1.26141 0.97001 1.02998 0.94155 1.70055 1.18148 1.30816 1.34289 0.84935 0.78100 0.76663 0.78621 1.18656 1.19582 1.20291 1.19682 0.86884 0.84947 0.82020 1.90454 1.16194 1.87946 1.58286 1.23227 1.01539 0.90519 1.06717 1.23257 1.03297 0.95898 0.89649 1.24378 1.00489 0.93368 1.00393 0.87314 1.23164 0.94989 0.90065 0.91738 1.89152 1.76916 1.32810 1.32837 1.23164 0.94084 0.91991 0.89708 0.93250 0.92713 0.91210 0.91467 0.88457 0.83926 0.87208 0.88207 0.87786 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.53 7.13 127.77 0.91 6.44 15 2 N -0.45 -24.59 3.02 -658.89 -1.99 -26.57 15 3 C -0.35 -20.71 9.27 84.04 0.78 -19.93 15 4 H 0.07 4.36 7.42 -2.91 -0.02 4.34 15 5 C 0.00 -0.05 5.11 84.93 0.43 0.39 15 6 N -0.89 -48.13 10.66 21.66 0.23 -47.90 15 7 Si 0.99 43.22 29.57 68.60 2.03 45.25 15 8 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 11 C 0.47 24.94 7.35 87.66 0.64 25.58 15 12 O -0.64 -39.05 16.56 -3.09 -0.05 -39.11 15 13 C -0.22 -8.23 1.98 -51.76 -0.10 -8.33 15 14 C -0.08 -2.32 9.89 30.64 0.30 -2.02 15 15 C -0.17 -5.23 6.91 -9.68 -0.07 -5.29 15 16 H 0.11 3.73 8.14 -2.39 -0.02 3.71 15 17 C 0.08 1.93 7.44 72.48 0.54 2.47 15 18 O -0.40 -13.47 11.65 -148.98 -1.74 -15.21 15 19 C 0.09 2.91 5.51 72.48 0.40 3.31 15 20 H 0.05 2.30 6.36 -2.39 -0.02 2.28 15 21 H 0.05 2.58 7.03 -2.39 -0.02 2.57 15 22 H 0.07 2.51 5.97 -2.39 -0.01 2.50 15 23 H 0.28 13.78 8.31 -92.71 -0.77 13.01 15 24 H 0.10 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.14 2.65 8.14 -2.38 -0.02 2.63 15 26 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 27 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 28 H 0.10 2.61 8.10 -2.38 -0.02 2.59 15 29 H 0.08 3.21 5.47 -2.39 -0.01 3.19 15 Total: -1.00 -72.79 242.74 3.48 -69.31 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.15 Total: 11.61 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 3.84 Total: 2.62 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -1.76 Total: -74.47 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -1.79 Total: -54.31 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -72.79 3.48 -69.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689148381.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.676 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds