Wall clock time and date at job start Mon Mar 30 2020 02:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08998 * 110.67604 * 31.76092 * 10 9 7 12 12 C 1.54890 * 110.75007 * 268.32775 * 10 9 7 13 13 C 1.54267 * 104.19109 * 203.74349 * 12 10 9 14 14 H 1.09004 * 117.76142 * 243.25180 * 13 12 10 15 15 C 1.55465 * 118.30485 * 87.20243 * 13 12 10 16 16 C 1.53003 * 59.84098 * 266.70310 * 15 13 12 17 17 C 1.50697 * 119.29786 * 248.29365 * 16 15 13 18 18 O 1.20822 * 120.00444 * 70.94474 * 17 16 15 19 19 O 1.34238 * 119.99314 * 250.94283 * 17 16 15 20 20 C 1.54265 * 118.19919 * 94.14168 * 16 15 13 21 21 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 23 23 H 1.08993 * 110.49031 * 322.41844 * 12 10 9 24 24 H 1.08998 * 110.48502 * 85.06847 * 12 10 9 25 25 H 1.08997 * 117.19084 * 159.17892 * 15 13 12 26 26 H 1.09001 * 118.05710 * 13.83688 * 15 13 12 27 27 H 0.96703 * 116.99267 * 180.02562 * 19 17 16 28 28 H 1.09000 * 110.48712 * 152.32691 * 20 16 15 29 29 H 1.08995 * 110.60240 * 29.73633 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 3.0015 -3.5536 0.5498 12 6 2.2961 -4.1608 -1.4316 13 6 2.4853 -5.6837 -1.2747 14 1 3.4507 -6.1067 -1.5527 15 6 1.2216 -6.5891 -1.2912 16 6 1.7857 -6.0808 0.0371 17 6 2.4138 -7.0604 0.9947 18 8 3.4805 -7.5632 0.7315 19 8 1.7881 -7.3742 2.1401 20 6 1.1958 -4.7852 0.6315 21 1 -0.4850 0.8400 -0.0004 22 1 0.3556 -2.3880 0.0068 23 1 1.4301 -3.9465 -2.0578 24 1 3.1934 -3.7061 -1.8513 25 1 1.3670 -7.6429 -1.5286 26 1 0.2841 -6.1546 -1.6382 27 1 2.2302 -8.0070 2.7226 28 1 1.2902 -4.7862 1.7174 29 1 0.1518 -4.6704 0.3404 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713000084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:26 Heat of formation + Delta-G solvation = -55.978328 kcal Electronic energy + Delta-G solvation = -13854.613319 eV Core-core repulsion = 11357.632713 eV Total energy + Delta-G solvation = -2496.980606 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.57134 -38.51241 -36.03266 -34.35092 -31.51230 -28.43118 -28.29339 -24.35950 -23.55276 -21.28655 -19.97429 -19.12784 -17.81461 -17.16864 -16.70914 -15.54863 -14.82551 -14.31735 -13.84915 -13.44444 -13.01110 -12.77451 -12.48383 -11.94352 -11.53663 -11.27100 -11.13298 -10.82803 -10.72146 -10.59362 -10.46653 -10.10599 -9.87604 -9.71280 -9.49816 -8.91159 -7.00638 -5.79869 -3.09228 2.19345 3.05181 3.43037 3.47804 3.48613 3.68642 4.50658 4.71024 4.73628 5.02119 5.30816 5.49751 5.57810 5.71433 5.82580 5.87891 6.02298 6.05279 6.19541 6.37137 6.47938 6.51021 6.52453 6.77036 7.02568 7.68197 7.97186 8.38573 9.49899 10.05858 10.40860 11.42516 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.053245 B = 0.007031 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.748025 B = 3981.623634 C = 4057.634084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.178 3.822 11 H 0.059 0.941 12 C -0.119 4.119 13 C -0.115 4.115 14 H 0.116 0.884 15 C -0.127 4.127 16 C -0.157 4.157 17 C 0.526 3.474 18 O -0.522 6.522 19 O -0.509 6.509 20 C -0.088 4.088 21 H 0.256 0.744 22 H 0.385 0.615 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.406 0.594 28 H 0.072 0.928 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 -13.155 0.222 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.356 5.356 10 C 0.067 3.933 11 H 0.078 0.922 12 C -0.160 4.160 13 C -0.134 4.134 14 H 0.134 0.866 15 C -0.164 4.164 16 C -0.159 4.159 17 C 0.369 3.631 18 O -0.411 6.411 19 O -0.320 6.320 20 C -0.127 4.127 21 H 0.066 0.934 22 H 0.219 0.781 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.264 0.736 28 H 0.091 0.909 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.240 -12.805 -0.074 13.000 hybrid contribution 0.500 0.353 0.475 0.775 sum 2.740 -12.452 0.401 12.756 Atomic orbital electron populations 1.69645 1.05139 1.25906 1.57337 1.24746 0.95508 0.97734 1.02704 0.86261 0.78539 0.83437 0.77903 1.21198 1.21678 1.21220 1.19229 0.91059 0.84044 1.43180 0.91108 1.42360 1.05784 0.99607 1.87857 1.21348 0.94468 0.85689 0.91822 0.92248 1.22862 1.02280 0.89288 1.01540 1.23977 0.96763 0.96657 0.95956 0.86588 1.23539 0.98673 0.99595 0.94607 1.21818 1.08343 0.97250 0.88481 1.22238 0.82066 0.79011 0.79781 1.90681 1.22348 1.52380 1.75676 1.84571 1.53735 1.61740 1.31951 1.22211 1.00222 0.89894 1.00327 0.93375 0.78054 0.90828 0.91382 0.88336 0.87332 0.73617 0.90888 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 15 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 15 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 15 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.24 -6.69 9.96 -15.06 -0.15 -6.84 15 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 15 9 N -0.72 -17.63 5.23 -51.50 -0.27 -17.90 15 10 C 0.18 3.52 3.56 -65.93 -0.24 3.29 15 11 H 0.06 1.23 8.09 -51.93 -0.42 0.81 15 12 C -0.12 -2.07 6.33 -25.07 -0.16 -2.23 15 13 C -0.11 -1.70 6.64 -88.19 -0.59 -2.28 15 14 H 0.12 1.67 8.14 -51.93 -0.42 1.25 15 15 C -0.13 -1.62 10.00 -25.42 -0.25 -1.88 15 16 C -0.16 -2.34 2.68 -154.54 -0.41 -2.76 15 17 C 0.53 7.78 7.88 36.00 0.28 8.06 15 18 O -0.52 -8.83 17.54 -18.75 -0.33 -9.16 15 19 O -0.51 -6.11 13.25 -39.28 -0.52 -6.63 15 20 C -0.09 -1.48 6.01 -25.07 -0.15 -1.63 15 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 22 H 0.39 9.99 7.76 -40.82 -0.32 9.67 15 23 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.11 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.41 2.86 9.10 45.56 0.41 3.28 15 28 H 0.07 1.23 7.90 -51.93 -0.41 0.82 15 29 H 0.08 1.30 8.01 -51.93 -0.42 0.88 15 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -31.48 256.23 -6.12 -37.60 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -2.81 Total: 8.79 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.76 Total: -6.67 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.46 Total: -44.94 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.85 Total: -15.79 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.48 -6.12 -37.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713000084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.375 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds