Wall clock time and date at job start Mon Mar 30 2020 03:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46798 * 2 1 4 4 N 1.46503 * 109.46672 * 180.02562 * 3 2 1 5 5 C 1.35310 * 125.86801 * 125.32835 * 4 3 2 6 6 C 1.35348 * 106.17503 * 180.10838 * 5 4 3 7 7 C 1.50700 * 126.75241 * 179.84708 * 6 5 4 8 8 H 1.09004 * 109.47210 * 4.71960 * 7 6 5 9 9 O 1.42903 * 109.47593 * 244.71658 * 7 6 5 10 10 C 1.50702 * 109.46869 * 124.71667 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 N 1.33770 * 106.49624 * 359.59617 * 6 5 4 19 19 N 1.28632 * 108.88455 * 0.25241 * 18 6 5 20 20 H 1.09000 * 109.46623 * 299.99619 * 1 2 3 21 21 H 1.08992 * 109.47554 * 59.99841 * 1 2 3 22 22 H 1.09003 * 109.46892 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47115 * 240.00561 * 2 1 3 24 24 H 1.08992 * 109.47554 * 120.00159 * 2 1 3 25 25 H 1.08989 * 109.47010 * 60.00281 * 3 2 1 26 26 H 1.08998 * 109.47091 * 299.99956 * 3 2 1 27 27 H 1.08000 * 126.91429 * 359.96633 * 5 4 3 28 28 H 0.96697 * 113.99557 * 300.00823 * 9 7 6 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2975 2.0767 -0.8954 6 6 5.5719 1.8109 -0.5253 7 6 6.8275 2.2892 -1.2078 8 1 6.5641 2.9674 -2.0195 9 8 7.5394 1.1682 -1.7358 10 6 7.6966 3.0122 -0.2113 11 1 7.3724 3.1146 0.8138 12 6 8.9086 3.5374 -0.6068 13 7 9.3036 3.4123 -1.8550 14 14 9.9894 4.4267 0.6302 15 1 9.3227 4.4310 1.9572 16 1 11.2969 3.7306 0.7359 17 1 10.2081 5.8253 0.1813 18 7 5.4978 1.0447 0.5687 19 7 4.2595 0.8447 0.8537 20 1 -0.3632 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8899 26 1 1.6766 1.9564 -0.8900 27 1 3.9774 2.6730 -1.7371 28 1 7.8061 0.5218 -1.0680 29 1 10.1561 3.7821 -2.1333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714415770.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:36 Heat of formation + Delta-G solvation = 37.104962 kcal Electronic energy + Delta-G solvation = -13674.013955 eV Core-core repulsion = 11213.362494 eV Total energy + Delta-G solvation = -2460.651461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.53899 -36.16271 -35.24725 -32.19558 -32.06514 -30.60598 -27.17101 -26.50508 -23.37021 -22.39355 -21.20832 -19.89965 -16.97115 -16.88617 -16.00323 -15.08972 -14.63295 -14.46969 -14.20091 -13.64789 -13.06664 -12.72075 -12.68216 -12.18253 -11.69462 -11.51061 -11.12631 -10.92566 -10.90117 -10.85406 -10.16199 -10.09260 -9.41199 -9.29888 -8.59449 -8.45092 -8.16606 -5.97073 -4.12310 2.20842 2.79921 3.32025 3.37917 3.41931 3.49076 4.42872 4.47095 4.60861 4.89819 5.00257 5.15406 5.22889 5.31972 5.39617 5.70274 5.71403 5.83305 5.97985 6.03416 6.28937 6.41142 7.02147 7.16650 7.62870 7.91776 8.18627 8.89735 9.25730 9.38900 9.61686 11.07549 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.066314 B = 0.006721 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.130929 B = 4165.230679 C = 4327.913138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.120 3.880 4 N -0.304 5.304 5 C -0.070 4.070 6 C -0.003 4.003 7 C 0.304 3.696 8 H 0.073 0.927 9 O -0.559 6.559 10 C -0.553 4.553 11 H 0.060 0.940 12 C 0.077 3.923 13 N -0.863 5.863 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.284 1.284 18 N -0.257 5.257 19 N -0.108 5.108 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.182 0.818 28 H 0.354 0.646 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.573 -2.934 1.153 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.002 4.002 4 N -0.099 5.099 5 C -0.219 4.219 6 C -0.141 4.141 7 C 0.244 3.756 8 H 0.090 0.910 9 O -0.361 6.361 10 C -0.592 4.592 11 H 0.078 0.922 12 C -0.128 4.128 13 N -0.500 5.500 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.210 1.210 18 N -0.125 5.125 19 N -0.087 5.087 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.199 0.801 28 H 0.198 0.802 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.511 -3.453 1.701 15.982 hybrid contribution 0.417 1.057 0.212 1.156 sum -15.094 -2.396 1.913 15.402 Atomic orbital electron populations 1.21699 0.94281 1.02510 1.02129 1.21810 0.96497 0.95069 1.04188 1.22005 0.74113 0.99545 1.04526 1.47277 1.08259 1.34517 1.19859 1.23426 0.91346 1.06696 1.00419 1.23939 0.97375 0.98294 0.94533 1.17879 0.81195 0.84356 0.92171 0.90958 1.86532 1.76429 1.35256 1.37893 1.21576 1.03976 1.37179 0.96441 0.92182 1.25029 0.97585 0.95096 0.95121 1.70081 1.20851 1.43341 1.15699 0.86537 0.80481 0.79211 0.81730 1.19667 1.20817 1.20971 1.75021 1.08113 1.15741 1.13587 1.78145 0.97154 1.18192 1.15205 0.92254 0.92372 0.91893 0.91128 0.90092 0.89039 0.88255 0.80086 0.80163 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 15 2 C -0.14 -1.33 6.06 -26.73 -0.16 -1.49 15 3 C 0.12 1.29 6.46 -4.04 -0.03 1.26 15 4 N -0.30 -5.10 3.44 -61.26 -0.21 -5.31 15 5 C -0.07 -1.29 11.49 -17.05 -0.20 -1.48 15 6 C 0.00 -0.08 6.04 -82.78 -0.50 -0.58 15 7 C 0.30 7.98 3.33 -29.03 -0.10 7.89 15 8 H 0.07 1.95 8.12 -51.93 -0.42 1.53 15 9 O -0.56 -15.10 12.71 -35.23 -0.45 -15.54 15 10 C -0.55 -15.80 8.74 -34.44 -0.30 -16.10 15 11 H 0.06 1.76 7.74 -52.49 -0.41 1.36 15 12 C 0.08 2.20 5.40 -17.82 -0.10 2.10 15 13 N -0.86 -25.58 12.83 55.43 0.71 -24.87 15 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 15 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 18 N -0.26 -6.09 12.40 33.29 0.41 -5.67 15 19 N -0.11 -2.21 12.91 60.35 0.78 -1.43 15 20 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 15 21 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 15 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 15 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.08 0.90 8.12 -51.93 -0.42 0.48 15 25 H 0.09 0.87 8.14 -51.94 -0.42 0.44 15 26 H 0.10 0.80 8.07 -51.93 -0.42 0.38 15 27 H 0.18 2.65 8.06 -52.49 -0.42 2.23 15 28 H 0.35 8.92 9.03 45.56 0.41 9.34 15 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 LS Contribution 260.74 15.07 3.93 3.93 Total: -1.00 -33.59 260.74 -3.78 -37.38 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -2.93 Total: 3.75 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.01 Total: -9.04 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 1.69 Total: -37.28 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.45 Total: -15.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.59 -3.78 -37.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714415770.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.483 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds