Wall clock time and date at job start Mon Mar 30 2020 03:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46798 * 2 1 4 4 N 1.46503 * 109.46672 * 180.02562 * 3 2 1 5 5 C 1.35310 * 125.86801 * 125.32835 * 4 3 2 6 6 C 1.35348 * 106.17503 * 180.10838 * 5 4 3 7 7 C 1.50700 * 126.75241 * 179.84708 * 6 5 4 8 8 H 1.09004 * 109.47210 * 4.71960 * 7 6 5 9 9 O 1.42903 * 109.47593 * 244.71658 * 7 6 5 10 10 C 1.50702 * 109.46869 * 124.71667 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 N 1.33770 * 106.49624 * 359.59617 * 6 5 4 19 19 N 1.28632 * 108.88455 * 0.25241 * 18 6 5 20 20 H 1.09000 * 109.46623 * 299.99619 * 1 2 3 21 21 H 1.08992 * 109.47554 * 59.99841 * 1 2 3 22 22 H 1.09003 * 109.46892 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47115 * 240.00561 * 2 1 3 24 24 H 1.08992 * 109.47554 * 120.00159 * 2 1 3 25 25 H 1.08989 * 109.47010 * 60.00281 * 3 2 1 26 26 H 1.08998 * 109.47091 * 299.99956 * 3 2 1 27 27 H 1.08000 * 126.91429 * 359.96633 * 5 4 3 28 28 H 0.96697 * 113.99557 * 300.00823 * 9 7 6 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2975 2.0767 -0.8954 6 6 5.5719 1.8109 -0.5253 7 6 6.8275 2.2892 -1.2078 8 1 6.5641 2.9674 -2.0195 9 8 7.5394 1.1682 -1.7358 10 6 7.6966 3.0122 -0.2113 11 1 7.3724 3.1146 0.8138 12 6 8.9086 3.5374 -0.6068 13 7 9.3036 3.4123 -1.8550 14 14 9.9894 4.4267 0.6302 15 1 9.3227 4.4310 1.9572 16 1 11.2969 3.7306 0.7359 17 1 10.2081 5.8253 0.1813 18 7 5.4978 1.0447 0.5687 19 7 4.2595 0.8447 0.8537 20 1 -0.3632 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8899 26 1 1.6766 1.9564 -0.8900 27 1 3.9774 2.6730 -1.7371 28 1 7.8061 0.5218 -1.0680 29 1 10.1561 3.7821 -2.1333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714415770.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:36 Heat of formation + Delta-G solvation = 11.073719 kcal Electronic energy + Delta-G solvation = -13675.142754 eV Core-core repulsion = 11213.362494 eV Total energy + Delta-G solvation = -2461.780260 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.06533 -37.82597 -36.64077 -34.25624 -33.36033 -32.29153 -28.86926 -27.80462 -25.28677 -23.43988 -22.66387 -21.35451 -19.02508 -18.34247 -17.26551 -16.66476 -16.55986 -15.87109 -15.73440 -15.08125 -14.67087 -14.27567 -13.65832 -13.36653 -13.06786 -12.90251 -12.81594 -12.72784 -12.31284 -12.10672 -11.86260 -11.63079 -11.37396 -10.83739 -10.71202 -10.41394 -9.97639 -8.13734 -6.36568 0.74527 1.39529 1.41363 1.53666 1.60458 1.70598 2.42302 3.12718 3.51801 3.70587 3.85367 4.13266 4.24288 4.31600 4.39297 4.45731 4.48167 4.71677 4.87722 5.10977 5.14455 5.31860 5.37533 5.56370 5.71809 5.84107 6.07437 6.69633 7.27644 7.44945 7.67611 8.90991 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.066314 B = 0.006721 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.130929 B = 4165.230679 C = 4327.913138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.105 3.895 4 N -0.285 5.285 5 C -0.046 4.046 6 C -0.043 4.043 7 C 0.305 3.695 8 H 0.061 0.939 9 O -0.572 6.572 10 C -0.568 4.568 11 H 0.044 0.956 12 C 0.030 3.970 13 N -0.895 5.895 14 Si 0.960 3.040 15 H -0.275 1.275 16 H -0.277 1.277 17 H -0.271 1.271 18 N -0.299 5.299 19 N -0.120 5.120 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.111 0.889 26 H 0.138 0.862 27 H 0.224 0.776 28 H 0.357 0.643 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.390 -2.173 1.229 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C -0.013 4.013 4 N -0.081 5.081 5 C -0.197 4.197 6 C -0.182 4.182 7 C 0.246 3.754 8 H 0.078 0.922 9 O -0.375 6.375 10 C -0.606 4.606 11 H 0.062 0.938 12 C -0.172 4.172 13 N -0.533 5.533 14 Si 0.784 3.216 15 H -0.200 1.200 16 H -0.203 1.203 17 H -0.196 1.196 18 N -0.166 5.166 19 N -0.099 5.099 20 H 0.087 0.913 21 H 0.092 0.908 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.129 0.871 26 H 0.156 0.844 27 H 0.240 0.760 28 H 0.202 0.798 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.365 -2.705 1.795 17.666 hybrid contribution 0.834 0.786 0.170 1.159 sum -16.531 -1.919 1.965 16.757 Atomic orbital electron populations 1.21663 0.91608 1.03231 1.03390 1.21776 0.98640 0.94028 1.02711 1.22666 0.70354 1.00900 1.07411 1.47731 1.10247 1.32127 1.17959 1.23846 0.89938 1.05249 1.00672 1.23496 0.98039 1.00829 0.95787 1.17614 0.82425 0.83868 0.91488 0.92158 1.86471 1.77040 1.35583 1.38433 1.21756 1.04941 1.37722 0.96157 0.93760 1.25796 0.98787 0.95735 0.96906 1.70175 1.21469 1.44290 1.17318 0.85512 0.78481 0.78498 0.79064 1.19952 1.20272 1.19606 1.74935 1.09974 1.17125 1.14584 1.78024 0.96594 1.19040 1.16214 0.91299 0.90777 0.91536 0.92177 0.92120 0.87119 0.84442 0.75998 0.79806 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.91 71.98 0.71 -0.73 15 2 C -0.13 -2.27 6.06 30.60 0.19 -2.08 15 3 C 0.11 1.90 6.46 86.38 0.56 2.46 15 4 N -0.29 -8.97 3.44 -347.73 -1.20 -10.17 15 5 C -0.05 -1.62 11.49 83.49 0.96 -0.66 15 6 C -0.04 -1.97 6.04 41.60 0.25 -1.72 15 7 C 0.31 16.36 3.33 29.10 0.10 16.46 15 8 H 0.06 3.31 8.12 -2.38 -0.02 3.29 15 9 O -0.57 -31.70 12.71 -148.98 -1.89 -33.60 15 10 C -0.57 -32.99 8.74 25.60 0.22 -32.77 15 11 H 0.04 2.66 7.74 -2.91 -0.02 2.63 15 12 C 0.03 1.74 5.40 84.66 0.46 2.20 15 13 N -0.90 -53.47 12.83 21.45 0.28 -53.20 15 14 Si 0.96 45.10 29.54 68.60 2.03 47.12 15 15 H -0.27 -12.91 7.11 99.48 0.71 -12.20 15 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 18 N -0.30 -14.35 12.40 -48.60 -0.60 -14.95 15 19 N -0.12 -4.83 12.91 37.02 0.48 -4.35 15 20 H 0.07 0.60 8.14 -2.39 -0.02 0.58 15 21 H 0.07 0.56 8.14 -2.39 -0.02 0.54 15 22 H 0.07 0.66 8.14 -2.39 -0.02 0.65 15 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 15 24 H 0.06 1.28 8.12 -2.39 -0.02 1.26 15 25 H 0.11 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.14 1.50 8.07 -2.39 -0.02 1.48 15 27 H 0.22 5.69 8.06 -2.91 -0.02 5.66 15 28 H 0.36 18.71 9.03 -74.06 -0.67 18.04 15 29 H 0.26 14.79 8.31 -92.70 -0.77 14.02 15 Total: -1.00 -73.67 260.74 3.01 -70.66 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.48 Total: 15.34 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 3.44 Total: -16.85 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.05 Total: -82.67 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.89 Total: -33.60 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.67 3.01 -70.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714415770.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.736 kcal (2) G-P(sol) polarization free energy of solvation -73.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds