Wall clock time and date at job start Mon Mar 30 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46837 * 2 1 4 4 C 1.35322 * 125.86299 * 124.71412 * 3 2 1 5 5 C 1.35351 * 106.16806 * 180.26356 * 4 3 2 6 6 C 1.50701 * 126.74701 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47270 * 64.99903 * 6 5 4 8 8 O 1.42901 * 109.47493 * 305.00146 * 6 5 4 9 9 C 1.50699 * 109.47291 * 185.00056 * 6 5 4 10 10 H 1.08000 * 119.99902 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00061 * 180.02562 * 9 6 5 12 12 N 1.31503 * 120.00176 * 359.97438 * 11 9 6 13 13 Si 1.86806 * 119.99554 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47335 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.46822 * 120.00252 * 13 11 9 16 16 H 1.48496 * 109.46637 * 239.99558 * 13 11 9 17 17 N 1.33769 * 106.50107 * 0.02562 * 5 4 3 18 18 N 1.28629 * 108.88659 * 359.97438 * 17 5 4 19 19 H 1.08998 * 109.47243 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47592 * 300.00173 * 1 2 3 21 21 H 1.09002 * 109.46796 * 60.00370 * 1 2 3 22 22 H 1.08994 * 109.47592 * 239.99827 * 2 1 3 23 23 H 1.09002 * 109.46796 * 119.99630 * 2 1 3 24 24 H 1.07991 * 126.91601 * 0.22443 * 4 3 2 25 25 H 1.09005 * 109.47046 * 59.99869 * 7 6 5 26 26 H 1.08994 * 109.47488 * 179.97438 * 7 6 5 27 27 H 1.09004 * 109.47264 * 300.00586 * 7 6 5 28 28 H 0.96703 * 113.99516 * 300.00229 * 8 6 5 29 29 H 0.96998 * 120.00177 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8714 1.9206 0.9015 5 6 3.0465 3.2102 0.5299 6 6 3.9109 4.2367 1.2158 7 6 5.3786 3.8162 1.1161 8 8 3.5355 4.3332 2.5912 9 6 3.7256 5.5756 0.5494 10 1 3.0492 5.6735 -0.2868 11 6 4.4195 6.6755 1.0073 12 7 5.2427 6.5563 2.0259 13 14 4.1902 8.3349 0.1807 14 1 3.2171 8.2029 -0.9332 15 1 3.6787 9.3152 1.1721 16 1 5.4932 8.8057 -0.3539 17 7 2.3015 3.3945 -0.5657 18 7 1.7050 2.2920 -0.8539 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.3212 1.4224 1.7474 25 1 5.6650 3.7426 0.0669 26 1 6.0038 4.5587 1.6117 27 1 5.5127 2.8477 1.5980 28 1 2.6154 4.5962 2.7302 29 1 5.7307 7.3302 2.3482 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714965171.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:29 Heat of formation + Delta-G solvation = 24.404699 kcal Electronic energy + Delta-G solvation = -14163.161980 eV Core-core repulsion = 11701.959794 eV Total energy + Delta-G solvation = -2461.202185 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.02917 -38.24380 -36.08843 -34.26350 -32.50102 -31.62179 -30.02419 -27.31085 -25.36939 -24.22193 -22.20423 -21.15068 -18.78786 -18.33940 -17.25309 -16.69297 -16.61610 -15.54092 -15.23574 -14.95677 -14.49659 -13.73085 -13.31028 -13.19443 -12.99186 -12.92192 -12.81384 -12.58547 -12.42174 -12.19766 -12.02142 -11.65065 -11.11098 -10.83022 -10.54704 -10.28458 -9.91965 -8.01048 -6.22610 0.78689 1.40707 1.43694 1.56558 1.66314 1.74912 2.46694 3.20694 3.57193 3.79431 4.01980 4.13145 4.22755 4.32793 4.55909 4.68580 4.77256 4.94005 4.99695 5.11708 5.20651 5.34375 5.60696 5.79004 5.89566 6.02665 6.30674 6.83248 7.37467 7.55188 7.78667 8.98759 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.052486 B = 0.008809 C = 0.008083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.350466 B = 3177.951130 C = 3463.395009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.287 5.287 4 C -0.040 4.040 5 C -0.041 4.041 6 C 0.318 3.682 7 C -0.109 4.109 8 O -0.563 6.563 9 C -0.562 4.562 10 H 0.051 0.949 11 C 0.037 3.963 12 N -0.886 5.886 13 Si 0.947 3.053 14 H -0.278 1.278 15 H -0.277 1.277 16 H -0.277 1.277 17 N -0.296 5.296 18 N -0.125 5.125 19 H 0.115 0.885 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.112 0.888 23 H 0.138 0.862 24 H 0.217 0.783 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.356 0.644 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 -14.168 -0.372 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.191 4.191 5 C -0.181 4.181 6 C 0.277 3.723 7 C -0.167 4.167 8 O -0.365 6.365 9 C -0.600 4.600 10 H 0.069 0.931 11 C -0.165 4.165 12 N -0.524 5.524 13 Si 0.773 3.227 14 H -0.203 1.203 15 H -0.203 1.203 16 H -0.203 1.203 17 N -0.162 5.162 18 N -0.104 5.104 19 H 0.134 0.866 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.130 0.870 23 H 0.156 0.844 24 H 0.234 0.766 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.201 0.799 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.780 -13.979 -1.451 15.196 hybrid contribution -0.036 0.988 0.343 1.047 sum -5.816 -12.991 -1.108 14.276 Atomic orbital electron populations 1.22057 0.92419 1.05020 1.02408 1.22574 0.97239 0.74590 1.07430 1.47858 1.29946 1.12774 1.17680 1.23739 1.00367 0.94961 1.00030 1.23468 1.02097 0.96324 0.96170 1.16958 0.88964 0.88299 0.78109 1.21459 0.96502 0.99631 0.99076 1.86467 1.31771 1.91167 1.27133 1.21861 1.26428 0.94670 1.17020 0.93082 1.25601 0.94225 1.01732 0.94989 1.70095 1.26856 1.30422 1.25044 0.85702 0.77895 0.80510 0.78602 1.20292 1.20314 1.20277 1.75047 1.09531 1.16179 1.15452 1.78073 1.22192 0.93653 1.16530 0.86633 0.92932 0.92880 0.86965 0.84436 0.76596 0.94651 0.91079 0.93875 0.79891 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.04 71.98 0.72 -1.79 15 2 C 0.10 1.70 7.18 86.38 0.62 2.32 15 3 N -0.29 -8.90 3.44 -347.73 -1.20 -10.10 15 4 C -0.04 -1.38 11.37 83.49 0.95 -0.43 15 5 C -0.04 -1.89 5.79 41.60 0.24 -1.65 15 6 C 0.32 16.32 0.89 -12.29 -0.01 16.31 15 7 C -0.11 -5.35 8.55 71.98 0.62 -4.74 15 8 O -0.56 -28.46 12.33 -148.98 -1.84 -30.30 15 9 C -0.56 -32.40 8.12 25.60 0.21 -32.20 15 10 H 0.05 3.11 6.96 -2.91 -0.02 3.09 15 11 C 0.04 2.08 5.24 84.66 0.44 2.52 15 12 N -0.89 -51.22 10.87 21.45 0.23 -50.99 15 13 Si 0.95 45.44 29.54 68.60 2.03 47.47 15 14 H -0.28 -13.55 7.11 99.48 0.71 -12.84 15 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 17 N -0.30 -14.38 11.28 -48.60 -0.55 -14.93 15 18 N -0.13 -5.08 12.91 37.02 0.48 -4.60 15 19 H 0.12 0.94 8.14 -2.39 -0.02 0.92 15 20 H 0.05 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.05 1.06 8.12 -2.39 -0.02 1.04 15 22 H 0.11 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.14 1.35 8.07 -2.39 -0.02 1.33 15 24 H 0.22 5.74 8.06 -2.92 -0.02 5.72 15 25 H 0.03 1.71 8.14 -2.38 -0.02 1.69 15 26 H 0.07 3.87 6.07 -2.39 -0.01 3.85 15 27 H 0.04 1.81 8.12 -2.38 -0.02 1.79 15 28 H 0.36 16.64 9.03 -74.06 -0.67 15.97 15 29 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 Total: -1.00 -72.42 254.17 3.43 -68.99 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.49 Total: 14.10 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 3.79 Total: -19.64 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.03 Total: -80.62 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.84 Total: -30.30 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.42 3.43 -68.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714965171.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.397 kcal (2) G-P(sol) polarization free energy of solvation -72.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds