Wall clock time and date at job start Mon Mar 30 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48505 * 109.46966 * 239.99496 * 3 2 1 5 5 H 1.48496 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47316 * 119.99932 * 3 2 1 7 7 C 1.37876 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00325 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47454 * 179.97438 * 9 7 2 11 11 C 1.46080 * 118.81268 * 269.73232 * 10 9 7 12 12 C 1.52851 * 110.90758 * 171.35552 * 11 10 9 13 13 H 1.08996 * 110.87922 * 166.93888 * 12 11 10 14 14 C 1.54131 * 110.11071 * 290.08103 * 12 11 10 15 15 C 1.54582 * 104.12283 * 94.13690 * 14 12 11 16 16 C 1.55195 * 103.34535 * 356.05308 * 15 14 12 17 17 H 1.09000 * 112.96109 * 152.24325 * 16 15 14 18 18 O 1.44733 * 104.65492 * 29.01125 * 16 15 14 19 19 C 1.34264 * 118.80716 * 90.00236 * 10 9 7 20 20 O 1.21285 * 120.17336 * 3.49174 * 19 10 9 21 21 H 0.97004 * 120.00207 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46691 * 59.99457 * 9 7 2 23 23 H 1.09000 * 109.46960 * 300.00154 * 9 7 2 24 24 H 1.09000 * 109.19020 * 291.71813 * 11 10 9 25 25 H 1.08999 * 109.18819 * 50.98856 * 11 10 9 26 26 H 1.09002 * 110.50226 * 335.47366 * 14 12 11 27 27 H 1.08999 * 110.60857 * 212.85373 * 14 12 11 28 28 H 1.08994 * 110.64608 * 237.58264 * 15 14 12 29 29 H 1.09004 * 110.78015 * 114.57887 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6560 -4.1517 -1.2794 12 6 3.7944 -5.1515 -1.0780 13 1 3.9776 -5.7204 -1.9895 14 6 5.0703 -4.4170 -0.6218 15 6 5.0273 -4.5088 0.9207 16 6 3.6680 -5.2035 1.2004 17 1 3.6641 -5.7711 2.1309 18 8 3.4321 -6.0291 0.0354 19 6 2.6234 -4.1044 1.1770 20 8 2.1698 -3.6722 2.2155 21 1 -0.4851 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 1.8226 -4.6522 -1.7725 25 1 3.0049 -3.3334 -1.9093 26 1 5.0469 -3.3757 -0.9431 27 1 5.9591 -4.9151 -1.0093 28 1 5.0494 -3.5141 1.3656 29 1 5.8526 -5.1144 1.2952 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719489810.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:00 Heat of formation + Delta-G solvation = -74.483501 kcal Electronic energy + Delta-G solvation = -14583.188147 eV Core-core repulsion = 12085.405096 eV Total energy + Delta-G solvation = -2497.783051 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72440 -37.37217 -34.86375 -32.60273 -31.99628 -30.15991 -27.85011 -25.24499 -23.62898 -21.93893 -20.98007 -18.21183 -16.97807 -16.58614 -16.39188 -15.19167 -14.97923 -14.59996 -13.71488 -13.46964 -13.16787 -12.98957 -12.31351 -12.17399 -11.75784 -11.31537 -11.11659 -10.98458 -10.94313 -10.86857 -10.61858 -10.28440 -10.14821 -9.65185 -8.59397 -8.45928 -7.69325 -6.06921 -4.12394 3.24463 3.29125 3.34043 3.37254 3.80389 4.11588 4.41669 4.63434 4.73019 4.81941 4.89913 5.22475 5.27232 5.53099 5.62253 5.80041 5.82691 5.89955 6.00507 6.08581 6.14763 6.64068 7.03241 7.42816 7.45545 7.88432 8.19608 8.39168 8.85052 9.01804 9.52461 11.01326 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.042404 B = 0.010055 C = 0.009713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.155671 B = 2784.039020 C = 2882.137136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.240 3.760 10 N -0.588 5.588 11 C 0.098 3.902 12 C 0.057 3.943 13 H 0.119 0.881 14 C -0.148 4.148 15 C -0.142 4.142 16 C 0.058 3.942 17 H 0.138 0.862 18 O -0.360 6.360 19 C 0.489 3.511 20 O -0.541 6.541 21 H 0.264 0.736 22 H 0.032 0.968 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.411 -9.002 -3.656 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.121 3.879 10 N -0.320 5.320 11 C -0.026 4.026 12 C -0.001 4.001 13 H 0.137 0.863 14 C -0.185 4.185 15 C -0.180 4.180 16 C -0.004 4.004 17 H 0.155 0.845 18 O -0.278 6.278 19 C 0.275 3.725 20 O -0.419 6.419 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.906 -8.867 -3.152 12.957 hybrid contribution 0.495 1.205 -0.117 1.308 sum 9.401 -7.661 -3.269 12.561 Atomic orbital electron populations 1.69922 1.06020 1.27188 1.50077 1.24938 0.94889 0.99218 0.95007 0.86552 0.79529 0.82704 0.78592 1.20238 1.21096 1.20171 1.21344 0.93201 0.90606 1.51542 0.92564 1.19347 0.87725 0.82164 0.98676 1.47746 1.45481 1.34873 1.03886 1.21811 0.96703 0.96636 0.87480 1.23676 0.93417 0.91118 0.91904 0.86287 1.22896 0.97767 1.02254 0.95630 1.23023 0.96456 1.02182 0.96331 1.23972 0.93853 0.90744 0.91790 0.84468 1.89647 1.87609 1.35650 1.14921 1.20830 0.83420 0.84020 0.84255 1.90683 1.57345 1.61935 1.31947 0.92587 0.94975 0.93546 0.91599 0.89867 0.89474 0.90341 0.89586 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 7 C -0.53 -14.96 9.38 -34.44 -0.32 -15.29 15 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 15 9 C 0.24 6.42 5.13 -5.20 -0.03 6.39 15 10 N -0.59 -13.01 2.81 -175.23 -0.49 -13.50 15 11 C 0.10 1.65 5.89 -4.35 -0.03 1.63 15 12 C 0.06 0.77 4.39 -26.22 -0.12 0.66 15 13 H 0.12 1.23 8.14 -51.93 -0.42 0.80 15 14 C -0.15 -1.87 6.55 -25.31 -0.17 -2.04 15 15 C -0.14 -1.98 6.51 -24.74 -0.16 -2.15 15 16 C 0.06 0.96 4.80 -26.26 -0.13 0.83 15 17 H 0.14 2.03 8.14 -51.93 -0.42 1.61 15 18 O -0.36 -5.81 11.39 -35.23 -0.40 -6.21 15 19 C 0.49 10.86 6.50 -10.75 -0.07 10.79 15 20 O -0.54 -14.34 16.55 5.55 0.09 -14.24 15 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 22 H 0.03 0.86 8.04 -51.92 -0.42 0.45 15 23 H 0.05 1.41 7.28 -51.93 -0.38 1.03 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.08 1.36 7.95 -51.93 -0.41 0.95 15 26 H 0.09 1.18 7.73 -51.93 -0.40 0.78 15 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.09 1.35 7.86 -51.93 -0.41 0.94 15 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 245.19 15.07 3.69 3.69 Total: -1.00 -33.28 245.19 -6.18 -39.46 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -3.68 Total: -2.45 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.11 Total: 2.50 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.24 Total: -39.44 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.31 Total: -20.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.28 -6.18 -39.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719489810.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.025 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds