Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99963 * 2 1 4 4 H 1.48502 * 109.46915 * 267.52315 * 3 2 1 5 5 H 1.48499 * 109.46946 * 27.51605 * 3 2 1 6 6 H 1.48500 * 109.47351 * 147.51950 * 3 2 1 7 7 C 1.38812 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00200 * 339.30832 * 7 2 1 9 9 N 1.36940 * 119.99803 * 159.31371 * 7 2 1 10 10 C 1.45315 * 118.81842 * 154.13277 * 9 7 2 11 11 C 1.51707 * 111.99763 * 124.07061 * 10 9 7 12 12 C 1.52102 * 112.46390 * 41.34179 * 11 10 9 13 13 H 1.09002 * 114.85275 * 129.57044 * 12 11 10 14 14 C 1.51962 * 121.29601 * 339.50868 * 12 11 10 15 15 H 1.09002 * 115.76958 * 149.69075 * 14 12 11 16 16 C 1.44081 * 119.24375 * 334.29621 * 9 7 2 17 17 C 1.52125 * 60.77122 * 256.22140 * 14 12 11 18 18 H 1.08993 * 117.54184 * 107.44573 * 17 14 12 19 19 C 1.50704 * 117.54163 * 252.64017 * 17 14 12 20 20 O 1.20829 * 120.00085 * 68.60845 * 19 17 14 21 21 O 1.34224 * 119.99860 * 248.60481 * 19 17 14 22 22 H 0.96995 * 119.99839 * 359.97438 * 1 2 3 23 23 H 1.08995 * 108.97490 * 3.41603 * 10 9 7 24 24 H 1.08999 * 108.90324 * 244.67833 * 10 9 7 25 25 H 1.09001 * 108.88854 * 280.57008 * 11 10 9 26 26 H 1.09004 * 108.88430 * 162.10582 * 11 10 9 27 27 H 1.09002 * 109.47932 * 99.15776 * 16 9 7 28 28 H 1.09000 * 107.92518 * 340.57095 * 16 9 7 29 29 H 0.96704 * 117.00311 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5501 2.0162 -1.3988 5 1 1.4223 2.6673 0.6468 6 1 3.5205 1.4560 0.7518 7 6 2.0103 -1.2021 -0.0005 8 1 1.5226 -2.1074 0.3295 9 7 3.3135 -1.2401 -0.4195 10 6 4.1821 -2.2888 0.0877 11 6 4.8120 -3.0959 -1.0318 12 6 5.2693 -2.2237 -2.1909 13 1 6.2954 -2.3951 -2.5162 14 6 4.7037 -0.8288 -2.4002 15 1 5.3770 -0.1096 -2.8666 16 6 3.7848 -0.2411 -1.3446 17 6 4.2267 -1.9654 -3.2919 18 1 3.2172 -2.3431 -3.1302 19 6 4.7049 -1.9776 -4.7210 20 8 5.8680 -2.1936 -4.9671 21 8 3.8387 -1.7486 -5.7204 22 1 -0.4849 0.8400 0.0004 23 1 3.5986 -2.9567 0.7213 24 1 4.9724 -1.8346 0.6854 25 1 4.0829 -3.8178 -1.3998 26 1 5.6721 -3.6364 -0.6363 27 1 4.3195 0.5363 -0.7987 28 1 2.9161 0.2003 -1.8331 29 1 4.1921 -1.7662 -6.6204 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721277440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = -43.597127 kcal Electronic energy + Delta-G solvation = -14297.293737 eV Core-core repulsion = 11800.850020 eV Total energy + Delta-G solvation = -2496.443717 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42892 -38.60386 -36.01358 -34.57348 -31.89094 -30.74954 -26.99568 -24.84749 -23.38382 -21.94088 -20.14826 -18.52072 -17.96808 -17.06933 -16.33545 -15.54163 -15.05849 -14.51304 -14.18431 -13.57303 -13.42403 -12.85041 -12.40882 -12.06569 -11.88259 -11.50144 -11.42861 -11.14969 -10.60081 -10.52058 -10.27617 -9.94241 -9.71038 -9.56049 -9.30839 -8.66191 -7.03874 -5.98983 -3.36804 2.24222 3.12641 3.31005 3.46957 3.48755 3.96802 4.49037 4.90148 4.99476 5.10303 5.16343 5.32739 5.52288 5.61661 5.80902 5.89902 6.09915 6.26463 6.33515 6.39439 6.47347 6.57400 6.60337 6.64939 6.87394 7.98368 8.04305 8.29335 8.96376 9.70345 9.99107 11.16546 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.034707 B = 0.010964 C = 0.009789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.554371 B = 2553.095917 C = 2859.702451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.026 3.974 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.271 4.271 8 H 0.088 0.912 9 N -0.599 5.599 10 C 0.152 3.848 11 C -0.109 4.109 12 C -0.099 4.099 13 H 0.108 0.892 14 C -0.115 4.115 15 H 0.101 0.899 16 C 0.155 3.845 17 C -0.170 4.170 18 H 0.142 0.858 19 C 0.513 3.487 20 O -0.527 6.527 21 O -0.510 6.510 22 H 0.264 0.736 23 H 0.068 0.932 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 -3.081 -6.401 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.173 4.173 3 Si 0.713 3.287 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.399 4.399 8 H 0.106 0.894 9 N -0.321 5.321 10 C 0.025 3.975 11 C -0.148 4.148 12 C -0.117 4.117 13 H 0.126 0.874 14 C -0.135 4.135 15 H 0.119 0.881 16 C 0.028 3.972 17 C -0.189 4.189 18 H 0.159 0.841 19 C 0.357 3.643 20 O -0.417 6.417 21 O -0.321 6.321 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 9.047 -3.049 -6.043 11.298 hybrid contribution 0.624 0.984 -0.838 1.435 sum 9.670 -2.065 -6.881 12.047 Atomic orbital electron populations 1.69833 1.05729 1.26693 1.52488 1.25249 0.95223 0.97595 0.99276 0.87073 0.79540 0.84564 0.77521 1.21282 1.23078 1.19826 1.18989 0.85135 0.95053 1.40711 0.89431 1.43225 1.09737 1.30810 1.48354 1.20232 0.93315 0.90761 0.93162 1.21186 1.00265 0.97714 0.95674 1.22130 0.96487 0.98126 0.94963 0.87376 1.22407 1.01168 0.91476 0.98411 0.88093 1.20107 0.96351 0.91535 0.89178 1.22006 1.02775 1.09845 0.84310 0.84059 1.22673 0.83041 0.70983 0.87561 1.90661 1.19487 1.46345 1.85212 1.84598 1.44830 1.83415 1.19237 0.92650 0.91380 0.96098 0.91549 0.91544 0.95221 0.90238 0.73752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.97 55.49 0.78 -26.49 15 2 C 0.03 0.73 5.14 -17.43 -0.09 0.64 15 3 Si 0.88 22.00 24.01 -169.99 -4.08 17.92 15 4 H -0.29 -6.82 6.54 56.52 0.37 -6.45 15 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 15 6 H -0.27 -6.70 6.67 56.52 0.38 -6.32 15 7 C -0.27 -7.36 9.83 -15.06 -0.15 -7.51 15 8 H 0.09 2.53 7.96 -52.49 -0.42 2.11 15 9 N -0.60 -13.83 2.78 -177.59 -0.49 -14.33 15 10 C 0.15 2.89 6.36 -5.33 -0.03 2.86 15 11 C -0.11 -1.74 5.97 -27.84 -0.17 -1.90 15 12 C -0.10 -1.62 5.71 -91.18 -0.52 -2.14 15 13 H 0.11 1.68 7.65 -51.93 -0.40 1.28 15 14 C -0.11 -2.06 5.72 -92.20 -0.53 -2.59 15 15 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 16 C 0.15 3.34 4.18 -5.94 -0.02 3.32 15 17 C -0.17 -2.92 5.71 -91.79 -0.52 -3.44 15 18 H 0.14 2.61 8.14 -51.93 -0.42 2.18 15 19 C 0.51 8.18 8.11 36.01 0.29 8.48 15 20 O -0.53 -9.25 17.01 -18.75 -0.32 -9.57 15 21 O -0.51 -6.83 13.42 -39.24 -0.53 -7.36 15 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 23 H 0.07 1.28 7.74 -51.93 -0.40 0.88 15 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 25 H 0.07 1.06 8.05 -51.93 -0.42 0.64 15 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.03 0.66 5.86 -51.93 -0.30 0.36 15 28 H 0.08 1.89 5.15 -51.93 -0.27 1.62 15 29 H 0.40 3.28 9.10 45.56 0.41 3.69 15 LS Contribution 240.65 15.07 3.63 3.63 Total: -1.00 -31.47 240.65 -5.44 -36.91 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -2.67 Total: 1.57 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.74 Total: -2.28 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.28 Total: -40.82 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.85 Total: -16.93 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.08 Total: 17.92 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.47 -5.44 -36.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721277440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.692 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds