Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99963 * 2 1 4 4 H 1.48502 * 109.46915 * 267.52315 * 3 2 1 5 5 H 1.48499 * 109.46946 * 27.51605 * 3 2 1 6 6 H 1.48500 * 109.47351 * 147.51950 * 3 2 1 7 7 C 1.38812 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00200 * 339.30832 * 7 2 1 9 9 N 1.36940 * 119.99803 * 159.31371 * 7 2 1 10 10 C 1.45315 * 118.81842 * 154.13277 * 9 7 2 11 11 C 1.51707 * 111.99763 * 124.07061 * 10 9 7 12 12 C 1.52102 * 112.46390 * 41.34179 * 11 10 9 13 13 H 1.09002 * 114.85275 * 129.57044 * 12 11 10 14 14 C 1.51962 * 121.29601 * 339.50868 * 12 11 10 15 15 H 1.09002 * 115.76958 * 149.69075 * 14 12 11 16 16 C 1.44081 * 119.24375 * 334.29621 * 9 7 2 17 17 C 1.52125 * 60.77122 * 256.22140 * 14 12 11 18 18 H 1.08993 * 117.54184 * 107.44573 * 17 14 12 19 19 C 1.50704 * 117.54163 * 252.64017 * 17 14 12 20 20 O 1.20829 * 120.00085 * 68.60845 * 19 17 14 21 21 O 1.34224 * 119.99860 * 248.60481 * 19 17 14 22 22 H 0.96995 * 119.99839 * 359.97438 * 1 2 3 23 23 H 1.08995 * 108.97490 * 3.41603 * 10 9 7 24 24 H 1.08999 * 108.90324 * 244.67833 * 10 9 7 25 25 H 1.09001 * 108.88854 * 280.57008 * 11 10 9 26 26 H 1.09004 * 108.88430 * 162.10582 * 11 10 9 27 27 H 1.09002 * 109.47932 * 99.15776 * 16 9 7 28 28 H 1.09000 * 107.92518 * 340.57095 * 16 9 7 29 29 H 0.96704 * 117.00311 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5501 2.0162 -1.3988 5 1 1.4223 2.6673 0.6468 6 1 3.5205 1.4560 0.7518 7 6 2.0103 -1.2021 -0.0005 8 1 1.5226 -2.1074 0.3295 9 7 3.3135 -1.2401 -0.4195 10 6 4.1821 -2.2888 0.0877 11 6 4.8120 -3.0959 -1.0318 12 6 5.2693 -2.2237 -2.1909 13 1 6.2954 -2.3951 -2.5162 14 6 4.7037 -0.8288 -2.4002 15 1 5.3770 -0.1096 -2.8666 16 6 3.7848 -0.2411 -1.3446 17 6 4.2267 -1.9654 -3.2919 18 1 3.2172 -2.3431 -3.1302 19 6 4.7049 -1.9776 -4.7210 20 8 5.8680 -2.1936 -4.9671 21 8 3.8387 -1.7486 -5.7204 22 1 -0.4849 0.8400 0.0004 23 1 3.5986 -2.9567 0.7213 24 1 4.9724 -1.8346 0.6854 25 1 4.0829 -3.8178 -1.3998 26 1 5.6721 -3.6364 -0.6363 27 1 4.3195 0.5363 -0.7987 28 1 2.9161 0.2003 -1.8331 29 1 4.1921 -1.7662 -6.6204 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721277440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = -65.835153 kcal Electronic energy + Delta-G solvation = -14298.258051 eV Core-core repulsion = 11800.850020 eV Total energy + Delta-G solvation = -2497.408030 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.71292 -40.02168 -37.23616 -36.24672 -33.75885 -32.41349 -28.64682 -26.50823 -24.83114 -23.65922 -21.43047 -20.12223 -19.29417 -18.55679 -17.89399 -17.20220 -16.57032 -16.14178 -15.55688 -15.30791 -14.99220 -14.49263 -14.03471 -13.69005 -13.33625 -13.15412 -12.70156 -12.62671 -12.42826 -12.25077 -11.72072 -11.64788 -11.40277 -11.08004 -10.90146 -10.64971 -8.95706 -8.16470 -5.50247 0.99688 1.32356 1.42812 1.50894 1.99409 2.41524 2.60817 3.07348 3.39001 3.66146 3.74076 3.81738 4.20160 4.30576 4.44777 4.47875 4.62670 4.73169 4.86176 4.97203 5.03564 5.13814 5.14971 5.47594 5.53084 5.90594 6.13488 6.97637 6.97883 7.68321 7.96150 9.02758 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.034707 B = 0.010964 C = 0.009789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.554371 B = 2553.095917 C = 2859.702451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.031 4.031 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.311 1.311 6 H -0.264 1.264 7 C -0.257 4.257 8 H 0.058 0.942 9 N -0.611 5.611 10 C 0.144 3.856 11 C -0.103 4.103 12 C -0.083 4.083 13 H 0.127 0.873 14 C -0.122 4.122 15 H 0.122 0.878 16 C 0.153 3.847 17 C -0.174 4.174 18 H 0.122 0.878 19 C 0.524 3.476 20 O -0.542 6.542 21 O -0.509 6.509 22 H 0.262 0.738 23 H 0.062 0.938 24 H 0.035 0.965 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 -3.148 -7.317 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.226 4.226 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.240 1.240 6 H -0.189 1.189 7 C -0.386 4.386 8 H 0.075 0.925 9 N -0.334 5.334 10 C 0.019 3.981 11 C -0.142 4.142 12 C -0.102 4.102 13 H 0.145 0.855 14 C -0.142 4.142 15 H 0.140 0.860 16 C 0.027 3.973 17 C -0.193 4.193 18 H 0.140 0.860 19 C 0.368 3.632 20 O -0.433 6.433 21 O -0.323 6.323 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 11.498 -3.133 -6.994 13.818 hybrid contribution -0.155 0.902 -0.580 1.083 sum 11.343 -2.232 -7.573 13.820 Atomic orbital electron populations 1.69961 1.07386 1.27274 1.55338 1.25857 0.95787 1.00864 1.00124 0.86085 0.78227 0.80303 0.78206 1.19647 1.24007 1.18894 1.18953 0.86858 0.93858 1.38971 0.92457 1.43342 1.08843 1.32093 1.49122 1.20441 0.93028 0.90039 0.94578 1.21138 1.01397 0.97167 0.94499 1.22228 0.97073 0.96431 0.94450 0.85474 1.22234 1.01195 0.92664 0.98125 0.85962 1.20023 0.96058 0.91456 0.89731 1.21921 1.02311 1.09378 0.85728 0.86003 1.22272 0.82775 0.70667 0.87464 1.90661 1.19995 1.47201 1.85448 1.84538 1.44482 1.82695 1.20568 0.92908 0.91972 0.94704 0.91832 0.87833 0.94990 0.92898 0.70907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 13.97 21.65 0.30 -58.93 15 2 C -0.03 -1.79 5.14 84.86 0.44 -1.36 15 3 Si 0.94 45.77 24.01 68.60 1.65 47.41 15 4 H -0.27 -12.32 6.54 99.48 0.65 -11.67 15 5 H -0.31 -15.42 7.11 99.48 0.71 -14.71 15 6 H -0.26 -12.28 6.67 99.48 0.66 -11.62 15 7 C -0.26 -14.21 9.83 84.03 0.83 -13.38 15 8 H 0.06 3.44 7.96 -2.91 -0.02 3.42 15 9 N -0.61 -27.76 2.78 -715.76 -1.99 -29.76 15 10 C 0.14 5.23 6.36 86.18 0.55 5.78 15 11 C -0.10 -2.97 5.97 29.87 0.18 -2.79 15 12 C -0.08 -2.46 5.71 -11.16 -0.06 -2.52 15 13 H 0.13 3.36 7.65 -2.39 -0.02 3.34 15 14 C -0.12 -4.08 5.72 -11.82 -0.07 -4.15 15 15 H 0.12 3.57 8.14 -2.39 -0.02 3.55 15 16 C 0.15 6.39 4.18 86.43 0.36 6.75 15 17 C -0.17 -5.60 5.71 -11.55 -0.07 -5.66 15 18 H 0.12 4.42 8.14 -2.39 -0.02 4.40 15 19 C 0.52 15.28 8.11 71.24 0.58 15.86 15 20 O -0.54 -17.28 17.01 21.96 0.37 -16.90 15 21 O -0.51 -12.30 13.42 -51.36 -0.69 -12.99 15 22 H 0.26 15.50 8.31 -92.71 -0.77 14.73 15 23 H 0.06 2.30 7.74 -2.39 -0.02 2.28 15 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 25 H 0.06 1.88 8.05 -2.39 -0.02 1.87 15 26 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 27 H 0.03 1.34 5.86 -2.39 -0.01 1.33 15 28 H 0.05 2.48 5.15 -2.39 -0.01 2.47 15 29 H 0.43 5.62 9.10 -74.05 -0.67 4.95 15 Total: -1.00 -67.65 240.65 2.76 -64.89 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.39 Total: 7.75 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 2.73 Total: -1.47 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -1.69 Total: -88.69 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.32 Total: -29.90 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.65 Total: 47.41 kcal Total: -67.65 2.76 -64.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721277440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.949 kcal (2) G-P(sol) polarization free energy of solvation -67.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds