Wall clock time and date at job start Mon Mar 30 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00085 * 2 1 4 4 H 1.48493 * 109.47633 * 239.99714 * 3 2 1 5 5 H 1.48500 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47286 * 119.99985 * 3 2 1 7 7 C 1.38810 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00218 * 167.09202 * 7 2 1 9 9 N 1.36939 * 119.99988 * 347.09114 * 7 2 1 10 10 C 1.45315 * 118.81607 * 152.06810 * 9 7 2 11 11 C 1.51718 * 111.99231 * 124.08301 * 10 9 7 12 12 C 1.52046 * 112.47128 * 41.34765 * 11 10 9 13 13 H 1.08995 * 114.86444 * 129.57180 * 12 11 10 14 14 C 1.51395 * 115.42615 * 270.28315 * 12 11 10 15 15 H 1.08992 * 117.75963 * 220.45923 * 14 12 11 16 16 C 1.50702 * 117.00963 * 5.20610 * 14 12 11 17 17 O 1.20820 * 120.00318 * 299.01106 * 16 14 12 18 18 O 1.34236 * 119.99850 * 119.00888 * 16 14 12 19 19 C 1.51974 * 121.30424 * 339.48366 * 12 11 10 20 20 H 1.08993 * 115.77215 * 150.47700 * 19 12 11 21 21 C 1.45522 * 118.81767 * 332.05384 * 9 7 2 22 22 H 0.97003 * 120.00182 * 359.97438 * 1 2 3 23 23 H 1.08998 * 108.97487 * 244.72348 * 10 9 7 24 24 H 1.08997 * 108.98101 * 3.43294 * 10 9 7 25 25 H 1.09002 * 108.88244 * 162.10844 * 11 10 9 26 26 H 1.09004 * 108.87918 * 280.56825 * 11 10 9 27 27 H 0.96691 * 116.99758 * 179.97438 * 18 16 14 28 28 H 1.08992 * 109.11586 * 340.36529 * 21 9 7 29 29 H 1.08995 * 109.11929 * 99.50719 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0697 -1.2140 -0.2084 9 7 1.3515 -2.3730 0.2660 10 6 1.8611 -3.6083 -0.3049 11 6 2.1413 -4.6528 0.7592 12 6 1.0608 -4.6980 1.8279 13 1 0.6641 -5.6915 2.0369 14 6 1.2807 -3.7828 3.0137 15 1 1.0369 -4.1675 4.0040 16 6 2.4641 -2.8520 2.9496 17 8 3.5822 -3.3014 2.8622 18 8 2.2760 -1.5235 2.9896 19 6 0.1271 -3.5210 2.0572 20 1 -0.8660 -3.7697 2.4311 21 6 0.1666 -2.3354 1.1099 22 1 -0.4850 0.8401 0.0004 23 1 1.1262 -4.0045 -1.0056 24 1 2.7840 -3.3953 -0.8443 25 1 2.2082 -5.6314 0.2838 26 1 3.0967 -4.4265 1.2326 27 1 3.0654 -0.9668 2.9459 28 1 0.1718 -1.4137 1.6916 29 1 -0.7219 -2.3542 0.4789 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721277441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:49 Heat of formation + Delta-G solvation = -40.778126 kcal Electronic energy + Delta-G solvation = -15044.086214 eV Core-core repulsion = 12547.764738 eV Total energy + Delta-G solvation = -2496.321476 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.12781 -37.73984 -35.25511 -34.36697 -31.67800 -29.81495 -26.42145 -24.60378 -23.00609 -21.94103 -19.55093 -17.95366 -17.10244 -16.75015 -15.88316 -15.23429 -14.54759 -14.24144 -13.58589 -13.38747 -12.78774 -12.57376 -12.04638 -11.90400 -11.19944 -10.93467 -10.81349 -10.66816 -10.53992 -10.26888 -10.03379 -9.79297 -9.65825 -9.38148 -8.98305 -8.36956 -6.64055 -5.74975 -3.19905 3.01763 3.37670 3.44137 3.44564 3.79045 4.26680 4.51274 5.16275 5.25901 5.42969 5.47072 5.53489 5.83320 6.03109 6.07144 6.25625 6.48284 6.54809 6.61808 6.69457 6.86766 7.07008 7.39689 7.45085 7.73602 7.84806 8.51654 8.77142 9.29441 9.93839 10.39372 11.33374 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.036547 B = 0.014241 C = 0.012909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.956943 B = 1965.686414 C = 2168.448881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.012 3.988 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.060 0.940 9 N -0.589 5.589 10 C 0.153 3.847 11 C -0.132 4.132 12 C -0.111 4.111 13 H 0.100 0.900 14 C -0.171 4.171 15 H 0.127 0.873 16 C 0.534 3.466 17 O -0.537 6.537 18 O -0.484 6.484 19 C -0.134 4.134 20 H 0.100 0.900 21 C 0.205 3.795 22 H 0.254 0.746 23 H 0.013 0.987 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.400 0.600 28 H 0.093 0.907 29 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -5.770 5.025 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.187 4.187 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.384 4.384 8 H 0.078 0.922 9 N -0.311 5.311 10 C 0.026 3.974 11 C -0.171 4.171 12 C -0.130 4.130 13 H 0.118 0.882 14 C -0.190 4.190 15 H 0.144 0.856 16 C 0.378 3.622 17 O -0.429 6.429 18 O -0.292 6.292 19 C -0.154 4.154 20 H 0.118 0.882 21 C 0.080 3.920 22 H 0.064 0.936 23 H 0.031 0.969 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.258 0.742 28 H 0.111 0.889 29 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.499 -5.987 5.006 7.820 hybrid contribution 0.903 1.095 0.085 1.421 sum 1.402 -4.893 5.092 7.199 Atomic orbital electron populations 1.69998 1.05170 1.25458 1.54246 1.24987 0.95230 0.98017 1.00428 0.86416 0.78823 0.83675 0.77972 1.21154 1.21689 1.21085 1.19091 0.91233 0.84397 1.43686 0.92180 1.43230 1.30886 1.02492 1.54494 1.20141 0.97362 0.87206 0.92672 1.21473 0.98312 0.99939 0.97391 1.21651 1.00855 0.94941 0.95504 0.88233 1.21478 0.97613 1.02227 0.97662 0.85562 1.21897 0.88760 0.81588 0.69923 1.90557 1.26588 1.78042 1.47687 1.84595 1.42606 1.18208 1.83804 1.22908 0.93121 0.99954 0.99401 0.88213 1.19797 0.89168 0.93099 0.89927 0.93614 0.96939 0.92813 0.92468 0.90109 0.74238 0.88936 0.94781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 10.97 55.49 0.61 -24.93 15 2 C 0.01 0.33 4.93 -17.43 -0.09 0.24 15 3 Si 0.90 21.27 29.57 -169.99 -5.03 16.25 15 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.25 -6.79 8.39 -15.06 -0.13 -6.91 15 8 H 0.06 1.62 7.79 -52.49 -0.41 1.21 15 9 N -0.59 -14.51 1.97 -176.46 -0.35 -14.86 15 10 C 0.15 3.35 6.37 -5.33 -0.03 3.32 15 11 C -0.13 -2.50 5.48 -27.87 -0.15 -2.66 15 12 C -0.11 -1.94 6.11 -92.44 -0.56 -2.51 15 13 H 0.10 1.45 8.14 -51.93 -0.42 1.03 15 14 C -0.17 -3.05 6.19 -93.03 -0.58 -3.63 15 15 H 0.13 1.86 8.14 -51.93 -0.42 1.44 15 16 C 0.53 10.86 5.78 36.01 0.21 11.06 15 17 O -0.54 -11.88 15.71 -18.74 -0.29 -12.17 15 18 O -0.48 -9.76 10.92 -39.27 -0.43 -10.19 15 19 C -0.13 -2.52 6.08 -92.19 -0.56 -3.08 15 20 H 0.10 1.61 8.14 -51.93 -0.42 1.19 15 21 C 0.21 4.83 3.92 -5.17 -0.02 4.81 15 22 H 0.25 7.00 8.31 -40.82 -0.34 6.66 15 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 15 24 H 0.05 1.18 7.76 -51.93 -0.40 0.78 15 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.08 1.69 5.39 -51.93 -0.28 1.41 15 27 H 0.40 6.95 9.10 45.56 0.41 7.37 15 28 H 0.09 2.41 5.79 -51.93 -0.30 2.11 15 29 H 0.03 0.88 7.94 -51.93 -0.41 0.47 15 LS Contribution 236.50 15.07 3.56 3.56 Total: -1.00 -30.23 236.50 -6.48 -36.71 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -2.64 Total: 4.98 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.91 Total: 0.65 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.26 Total: -39.79 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.72 Total: -22.36 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.23 -6.48 -36.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721277441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.072 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds