Wall clock time and date at job start Mon Mar 30 2020 02:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48506 * 109.46716 * 269.99656 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00089 * 3 2 1 6 6 H 1.48497 * 109.46950 * 150.00329 * 3 2 1 7 7 C 1.39075 * 119.99464 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 359.97438 * 7 2 1 9 9 N 1.36824 * 119.99447 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99524 * 179.97438 * 9 7 2 11 11 O 1.21663 * 120.00220 * 359.97438 * 10 9 7 12 12 C 1.46951 * 119.99743 * 179.72205 * 10 9 7 13 13 C 1.33116 * 120.00102 * 180.27402 * 12 10 9 14 14 C 1.50700 * 120.00035 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.87149 * 358.99130 * 14 13 12 16 16 C 1.54101 * 109.87693 * 120.00162 * 14 13 12 17 17 C 1.54812 * 104.18990 * 121.45551 * 16 14 13 18 18 C 1.55001 * 102.09433 * 20.87413 * 17 16 14 19 19 O 1.43748 * 109.87808 * 237.82760 * 14 13 12 20 20 H 0.97004 * 120.00120 * 0.02562 * 1 2 3 21 21 H 0.96990 * 119.99985 * 359.97438 * 9 7 2 22 22 H 1.08002 * 119.99704 * 0.26995 * 12 10 9 23 23 H 1.08002 * 120.00195 * 359.97438 * 13 12 10 24 24 H 1.09000 * 110.48464 * 240.12574 * 16 14 13 25 25 H 1.08997 * 110.49209 * 2.63809 * 16 14 13 26 26 H 1.08998 * 110.91342 * 139.07409 * 17 16 14 27 27 H 1.09004 * 110.90402 * 262.68163 * 17 16 14 28 28 H 1.09006 * 110.61348 * 81.47635 * 18 17 16 29 29 H 1.08987 * 110.62028 * 204.31895 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4951 2.0463 -1.4002 5 1 1.4451 2.6526 0.7000 6 1 3.5451 1.4401 0.7000 7 6 2.0088 -1.2045 -0.0005 8 1 1.4687 -2.1398 -0.0005 9 7 3.3770 -1.2045 0.0000 10 6 4.0508 -2.3718 0.0000 11 8 3.4425 -3.4254 0.0000 12 6 5.5203 -2.3718 -0.0056 13 6 6.1859 -3.5246 -0.0111 14 6 7.6929 -3.5247 -0.0163 15 1 8.0633 -2.4998 -0.0327 16 6 8.2211 -4.2529 1.2349 17 6 9.0847 -5.4054 0.6670 18 6 9.3982 -4.9012 -0.7648 19 8 8.1777 -4.2413 -1.1642 20 1 -0.4850 0.8401 -0.0004 21 1 3.8620 -0.3645 0.0004 22 1 6.0603 -1.4365 -0.0053 23 1 5.6459 -4.4600 -0.0111 24 1 8.8312 -3.5807 1.8383 25 1 7.3937 -4.6480 1.8242 26 1 10.0003 -5.5271 1.2456 27 1 8.5189 -6.3366 0.6362 28 1 10.2289 -4.1955 -0.7499 29 1 9.6191 -5.7383 -1.4268 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819205739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:20 Heat of formation + Delta-G solvation = -67.871871 kcal Electronic energy + Delta-G solvation = -13336.741247 eV Core-core repulsion = 10839.244898 eV Total energy + Delta-G solvation = -2497.496349 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.48694 -38.26424 -34.22242 -33.14709 -32.03822 -31.70729 -28.53234 -25.32731 -23.03026 -21.77555 -20.39418 -19.18763 -18.18963 -16.62055 -16.27477 -15.35943 -15.25321 -14.77412 -13.72478 -13.59971 -13.48864 -13.11185 -12.84498 -12.20743 -11.87251 -11.67467 -11.40134 -11.32483 -11.25956 -10.79251 -10.61657 -10.03321 -9.76756 -9.66730 -8.94991 -8.57674 -8.22980 -6.39608 -3.84434 1.90256 3.02165 3.06293 3.12566 3.90789 4.05034 4.31081 4.45084 4.55838 4.78004 4.84806 5.09678 5.17678 5.27904 5.43802 5.49349 5.56294 5.64210 5.69083 5.84626 5.96947 6.14924 6.77731 6.87626 6.93289 7.52943 8.11939 8.55498 8.89851 9.37277 9.83674 10.72725 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.064946 B = 0.005857 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.025950 B = 4779.403699 C = 4990.241707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.041 3.959 3 Si 0.882 3.118 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.302 4.302 8 H 0.122 0.878 9 N -0.573 5.573 10 C 0.466 3.534 11 O -0.585 6.585 12 C -0.162 4.162 13 C -0.114 4.114 14 C 0.107 3.893 15 H 0.072 0.928 16 C -0.149 4.149 17 C -0.155 4.155 18 C 0.044 3.956 19 O -0.367 6.367 20 H 0.276 0.724 21 H 0.373 0.627 22 H 0.112 0.888 23 H 0.129 0.871 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.699 -3.246 1.709 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.163 4.163 3 Si 0.708 3.292 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.140 0.860 9 N -0.209 5.209 10 C 0.256 3.744 11 O -0.470 6.470 12 C -0.183 4.183 13 C -0.135 4.135 14 C 0.050 3.950 15 H 0.090 0.910 16 C -0.187 4.187 17 C -0.193 4.193 18 C -0.033 4.033 19 O -0.287 6.287 20 H 0.086 0.914 21 H 0.206 0.794 22 H 0.130 0.870 23 H 0.147 0.853 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.937 -3.792 1.504 18.395 hybrid contribution 0.655 1.485 0.238 1.641 sum 18.593 -2.306 1.743 18.816 Atomic orbital electron populations 1.69603 1.05788 1.27844 1.47801 1.25128 0.95567 0.98232 0.97354 0.86627 0.79869 0.83632 0.79114 1.19386 1.19982 1.19284 1.19526 0.79479 0.96808 1.47280 0.86039 1.42178 1.07601 1.06444 1.64708 1.17859 0.86831 0.84419 0.85326 1.90652 1.69676 1.30840 1.55843 1.22801 0.95053 0.98124 1.02372 1.23268 0.93071 0.99359 0.97822 1.21784 0.92104 0.95770 0.85364 0.91018 1.22987 1.00218 0.97528 0.97946 1.23149 1.00278 0.99270 0.96582 1.23545 0.87963 0.96510 0.95289 1.88980 1.39207 1.67078 1.33388 0.91365 0.79437 0.86998 0.85350 0.90528 0.89720 0.90337 0.90317 0.92345 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.38 13.95 55.50 0.77 -24.60 15 2 C 0.04 1.14 5.50 -17.45 -0.10 1.05 15 3 Si 0.88 19.39 27.74 -169.99 -4.72 14.68 15 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 15 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 15 7 C -0.30 -8.71 10.16 -15.01 -0.15 -8.86 15 8 H 0.12 3.98 7.38 -52.49 -0.39 3.60 15 9 N -0.57 -14.25 5.08 -12.10 -0.06 -14.31 15 10 C 0.47 11.40 7.71 -12.73 -0.10 11.30 15 11 O -0.58 -16.69 15.79 5.22 0.08 -16.61 15 12 C -0.16 -3.01 9.64 -37.84 -0.36 -3.38 15 13 C -0.11 -1.95 8.52 -36.09 -0.31 -2.26 15 14 C 0.11 1.44 3.80 -27.31 -0.10 1.34 15 15 H 0.07 0.87 7.84 -51.93 -0.41 0.47 15 16 C -0.15 -1.58 6.63 -25.20 -0.17 -1.75 15 17 C -0.16 -1.40 7.15 -24.72 -0.18 -1.57 15 18 C 0.04 0.43 7.72 38.21 0.29 0.73 15 19 O -0.37 -5.30 11.17 -35.23 -0.39 -5.69 15 20 H 0.28 7.36 8.31 -40.82 -0.34 7.02 15 21 H 0.37 8.07 5.74 -40.82 -0.23 7.84 15 22 H 0.11 1.70 7.88 -52.49 -0.41 1.29 15 23 H 0.13 2.43 7.49 -52.49 -0.39 2.04 15 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.08 0.95 7.69 -51.93 -0.40 0.55 15 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 15 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 15 29 H 0.09 0.77 8.14 -51.94 -0.42 0.35 15 LS Contribution 254.34 15.07 3.83 3.83 Total: -1.00 -33.06 254.34 -5.17 -38.23 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.52 Total: 7.88 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.17 Total: -3.41 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.71 Total: -38.92 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.31 Total: -22.30 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.72 Total: 14.68 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.06 -5.17 -38.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819205739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.644 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds