Wall clock time and date at job start Mon Mar 30 2020 02:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48506 * 109.46716 * 269.99656 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00089 * 3 2 1 6 6 H 1.48497 * 109.46950 * 150.00329 * 3 2 1 7 7 C 1.39075 * 119.99464 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 359.97438 * 7 2 1 9 9 N 1.36824 * 119.99447 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99524 * 179.97438 * 9 7 2 11 11 O 1.21663 * 120.00220 * 359.97438 * 10 9 7 12 12 C 1.46951 * 119.99743 * 179.72205 * 10 9 7 13 13 C 1.33116 * 120.00102 * 180.27402 * 12 10 9 14 14 C 1.50700 * 120.00035 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.87149 * 358.99130 * 14 13 12 16 16 C 1.54101 * 109.87693 * 120.00162 * 14 13 12 17 17 C 1.54812 * 104.18990 * 121.45551 * 16 14 13 18 18 C 1.55001 * 102.09433 * 20.87413 * 17 16 14 19 19 O 1.43748 * 109.87808 * 237.82760 * 14 13 12 20 20 H 0.97004 * 120.00120 * 0.02562 * 1 2 3 21 21 H 0.96990 * 119.99985 * 359.97438 * 9 7 2 22 22 H 1.08002 * 119.99704 * 0.26995 * 12 10 9 23 23 H 1.08002 * 120.00195 * 359.97438 * 13 12 10 24 24 H 1.09000 * 110.48464 * 240.12574 * 16 14 13 25 25 H 1.08997 * 110.49209 * 2.63809 * 16 14 13 26 26 H 1.08998 * 110.91342 * 139.07409 * 17 16 14 27 27 H 1.09004 * 110.90402 * 262.68163 * 17 16 14 28 28 H 1.09006 * 110.61348 * 81.47635 * 18 17 16 29 29 H 1.08987 * 110.62028 * 204.31895 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4951 2.0463 -1.4002 5 1 1.4451 2.6526 0.7000 6 1 3.5451 1.4401 0.7000 7 6 2.0088 -1.2045 -0.0005 8 1 1.4687 -2.1398 -0.0005 9 7 3.3770 -1.2045 0.0000 10 6 4.0508 -2.3718 0.0000 11 8 3.4425 -3.4254 0.0000 12 6 5.5203 -2.3718 -0.0056 13 6 6.1859 -3.5246 -0.0111 14 6 7.6929 -3.5247 -0.0163 15 1 8.0633 -2.4998 -0.0327 16 6 8.2211 -4.2529 1.2349 17 6 9.0847 -5.4054 0.6670 18 6 9.3982 -4.9012 -0.7648 19 8 8.1777 -4.2413 -1.1642 20 1 -0.4850 0.8401 -0.0004 21 1 3.8620 -0.3645 0.0004 22 1 6.0603 -1.4365 -0.0053 23 1 5.6459 -4.4600 -0.0111 24 1 8.8312 -3.5807 1.8383 25 1 7.3937 -4.6480 1.8242 26 1 10.0003 -5.5271 1.2456 27 1 8.5189 -6.3366 0.6362 28 1 10.2289 -4.1955 -0.7499 29 1 9.6191 -5.7383 -1.4268 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819205739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:20 Heat of formation + Delta-G solvation = -93.151799 kcal Electronic energy + Delta-G solvation = -13337.837467 eV Core-core repulsion = 10839.244898 eV Total energy + Delta-G solvation = -2498.592569 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59378 -40.08196 -36.22640 -34.62812 -33.82807 -32.90387 -29.69758 -27.20211 -24.28210 -22.72450 -21.74244 -21.10596 -19.94954 -18.22142 -17.25940 -16.89037 -16.57540 -16.13017 -15.53540 -15.34205 -14.74797 -14.49981 -14.43524 -13.91239 -13.05980 -12.99223 -12.59238 -12.57801 -12.47486 -12.09676 -12.00003 -11.61381 -11.57468 -10.76841 -10.60588 -10.43141 -10.29543 -8.49763 -6.07946 0.40129 1.29023 1.37580 1.43560 2.18787 2.33333 2.81028 3.13224 3.25121 3.64253 3.79095 3.95609 4.13854 4.15929 4.40708 4.42650 4.51654 4.82442 4.86620 4.97429 5.10925 5.22193 5.33017 5.41911 5.58567 5.88521 5.98111 6.51135 6.78133 7.29760 7.87359 8.67335 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.064946 B = 0.005857 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.025950 B = 4779.403699 C = 4990.241707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.230 1.230 7 C -0.337 4.337 8 H 0.056 0.944 9 N -0.570 5.570 10 C 0.463 3.537 11 O -0.639 6.639 12 C -0.176 4.176 13 C -0.087 4.087 14 C 0.106 3.894 15 H 0.098 0.902 16 C -0.149 4.149 17 C -0.151 4.151 18 C 0.037 3.963 19 O -0.400 6.400 20 H 0.283 0.717 21 H 0.393 0.607 22 H 0.160 0.840 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.739 -1.342 2.113 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.211 4.211 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.153 1.153 7 C -0.466 4.466 8 H 0.074 0.926 9 N -0.209 5.209 10 C 0.254 3.746 11 O -0.528 6.528 12 C -0.197 4.197 13 C -0.108 4.108 14 C 0.049 3.951 15 H 0.115 0.885 16 C -0.186 4.186 17 C -0.188 4.188 18 C -0.039 4.039 19 O -0.320 6.320 20 H 0.093 0.907 21 H 0.229 0.771 22 H 0.178 0.822 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.090 0.910 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 22.006 -1.898 1.911 22.170 hybrid contribution -0.575 0.647 0.097 0.871 sum 21.431 -1.251 2.008 21.561 Atomic orbital electron populations 1.69769 1.08229 1.29737 1.48525 1.26231 0.96564 1.02905 0.95421 0.85333 0.79571 0.76259 0.80218 1.17908 1.19353 1.15344 1.19078 0.81471 0.95261 1.50771 0.92600 1.41929 1.06038 1.07584 1.65318 1.18965 0.89420 0.83383 0.82793 1.90620 1.71676 1.32874 1.57620 1.22659 0.91064 1.00776 1.05218 1.23565 0.95854 0.97696 0.93733 1.21904 0.88874 0.97682 0.86626 0.88472 1.23022 1.00402 0.98398 0.96797 1.23166 1.01120 0.98189 0.96345 1.23833 0.86904 0.97220 0.95928 1.88940 1.41257 1.67714 1.34090 0.90693 0.77085 0.82207 0.88322 0.87716 0.91047 0.87393 0.91181 0.90137 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.80 13.95 21.69 0.30 -55.50 15 2 C -0.01 -0.62 5.50 84.97 0.47 -0.15 15 3 Si 0.97 38.86 27.74 68.60 1.90 40.76 15 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 15 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 6 H -0.23 -7.81 6.52 99.48 0.65 -7.16 15 7 C -0.34 -20.38 10.16 84.12 0.85 -19.53 15 8 H 0.06 4.02 7.38 -2.91 -0.02 3.99 15 9 N -0.57 -28.57 5.08 -310.41 -1.58 -30.15 15 10 C 0.46 23.07 7.71 86.53 0.67 23.74 15 11 O -0.64 -38.62 15.79 -4.23 -0.07 -38.69 15 12 C -0.18 -6.25 9.64 23.40 0.23 -6.02 15 13 C -0.09 -2.88 8.52 24.54 0.21 -2.67 15 14 C 0.11 2.52 3.80 30.22 0.11 2.64 15 15 H 0.10 1.88 7.84 -2.39 -0.02 1.86 15 16 C -0.15 -2.65 6.63 31.59 0.21 -2.44 15 17 C -0.15 -2.20 7.15 31.90 0.23 -1.97 15 18 C 0.04 0.61 7.72 72.67 0.56 1.17 15 19 O -0.40 -10.51 11.17 -148.98 -1.66 -12.18 15 20 H 0.28 15.49 8.31 -92.71 -0.77 14.72 15 21 H 0.39 16.12 5.74 -92.72 -0.53 15.59 15 22 H 0.16 4.13 7.88 -2.91 -0.02 4.10 15 23 H 0.10 3.84 7.49 -2.91 -0.02 3.82 15 24 H 0.10 1.32 8.14 -2.39 -0.02 1.30 15 25 H 0.07 1.47 7.69 -2.39 -0.02 1.45 15 26 H 0.11 0.97 8.14 -2.39 -0.02 0.95 15 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 15 28 H 0.08 0.99 8.14 -2.38 -0.02 0.97 15 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 Total: -1.00 -78.69 254.34 2.99 -75.69 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.56 Total: 25.30 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 3.54 Total: -5.24 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.27 Total: -85.65 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -1.73 Total: -50.87 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.90 Total: 40.76 kcal Total: -78.69 2.99 -75.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819205739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.461 kcal (2) G-P(sol) polarization free energy of solvation -78.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds