Wall clock time and date at job start Mon Mar 30 2020 02:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47088 * 240.00037 * 3 2 1 5 5 H 1.48500 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47379 * 120.00018 * 3 2 1 7 7 C 1.39071 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00003 * 180.02562 * 7 2 1 9 9 N 1.36816 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00471 * 179.97438 * 9 7 2 11 11 O 1.21668 * 119.99930 * 359.97438 * 10 9 7 12 12 C 1.46949 * 120.00471 * 179.97438 * 10 9 7 13 13 C 1.33119 * 120.00363 * 186.43848 * 12 10 9 14 14 C 1.50699 * 119.99800 * 8.53591 * 13 12 10 15 15 H 1.08996 * 110.33440 * 22.62524 * 14 13 12 16 16 C 1.54481 * 110.37390 * 260.37285 * 14 13 12 17 17 C 1.54507 * 104.06456 * 217.08035 * 16 14 13 18 18 C 1.54481 * 104.06237 * 0.02562 * 17 16 14 19 19 O 1.44423 * 104.80212 * 23.97986 * 18 17 16 20 20 H 0.97005 * 120.00115 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99983 * 359.97438 * 9 7 2 22 22 H 1.08005 * 120.00067 * 6.44500 * 12 10 9 23 23 H 1.08005 * 120.00326 * 188.53080 * 13 12 10 24 24 H 1.09002 * 110.51062 * 335.72436 * 16 14 13 25 25 H 1.08997 * 110.51027 * 98.29518 * 16 14 13 26 26 H 1.09004 * 110.51176 * 118.64624 * 17 16 14 27 27 H 1.08996 * 110.51444 * 241.35225 * 17 16 14 28 28 H 1.09001 * 110.37437 * 142.81017 * 18 17 16 29 29 H 1.09007 * 110.37009 * 265.14731 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1011 1.6964 -1.2125 5 1 1.2824 2.7465 0.0006 6 1 3.1012 1.6965 1.2125 7 6 2.0089 -1.2044 0.0005 8 1 3.0889 -1.2043 0.0010 9 7 1.3248 -2.3893 0.0005 10 6 1.9987 -3.5564 0.0005 11 8 3.2153 -3.5564 0.0001 12 6 1.2640 -4.8291 0.0011 13 6 1.9233 -5.9783 0.1304 14 6 3.3920 -5.9704 0.4678 15 1 3.6644 -5.0326 0.9520 16 6 4.2379 -6.1829 -0.8072 17 6 5.4179 -7.0605 -0.3330 18 6 5.1449 -7.2749 1.1724 19 8 3.7200 -7.0906 1.3189 20 1 -0.4850 0.8401 0.0004 21 1 0.3548 -2.3893 0.0005 22 1 0.1890 -4.8321 -0.1035 23 1 1.4057 -6.9162 -0.0065 24 1 3.6569 -6.7033 -1.5687 25 1 4.5988 -5.2282 -1.1896 26 1 5.4203 -8.0146 -0.8600 27 1 6.3642 -6.5398 -0.4796 28 1 5.4295 -8.2843 1.4696 29 1 5.6860 -6.5371 1.7649 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819205742.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:30 Heat of formation + Delta-G solvation = -86.272821 kcal Electronic energy + Delta-G solvation = -13770.854885 eV Core-core repulsion = 11272.560611 eV Total energy + Delta-G solvation = -2498.294274 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.74913 -39.67649 -36.21953 -34.27139 -33.35149 -32.80416 -29.45985 -27.17525 -24.31232 -22.85452 -22.00926 -20.55350 -19.51039 -18.14125 -17.18087 -16.81478 -16.40869 -15.99410 -15.63063 -15.30869 -14.54004 -14.17157 -14.12743 -13.47764 -13.39096 -12.96435 -12.59663 -12.46647 -12.43685 -12.13861 -12.10374 -11.64834 -11.38563 -10.91850 -10.28460 -10.07418 -9.83859 -8.51816 -5.96016 0.52247 1.41034 1.44363 1.52293 2.28254 2.42909 3.09466 3.27419 3.33188 3.75110 3.90557 4.10461 4.27069 4.33207 4.49335 4.56304 4.63812 4.86389 4.97267 4.99172 5.16701 5.23259 5.31657 5.36871 5.56946 5.96929 6.06300 6.56568 7.07754 7.51863 8.08137 8.65278 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.055017 B = 0.006936 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.812894 B = 4035.850185 C = 4343.479679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.084 0.916 9 N -0.559 5.559 10 C 0.450 3.550 11 O -0.620 6.620 12 C -0.189 4.189 13 C -0.081 4.081 14 C 0.081 3.919 15 H 0.084 0.916 16 C -0.133 4.133 17 C -0.147 4.147 18 C 0.040 3.960 19 O -0.398 6.398 20 H 0.280 0.720 21 H 0.397 0.603 22 H 0.151 0.849 23 H 0.155 0.845 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -10.860 -0.707 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.102 0.898 9 N -0.193 5.193 10 C 0.242 3.758 11 O -0.510 6.510 12 C -0.210 4.210 13 C -0.101 4.101 14 C 0.025 3.975 15 H 0.101 0.899 16 C -0.171 4.171 17 C -0.184 4.184 18 C -0.037 4.037 19 O -0.318 6.318 20 H 0.090 0.910 21 H 0.231 0.769 22 H 0.168 0.832 23 H 0.173 0.827 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.134 0.866 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.923 -10.774 -0.581 11.860 hybrid contribution -0.220 1.147 -0.112 1.174 sum 4.702 -9.627 -0.692 10.736 Atomic orbital electron populations 1.69643 1.07053 1.29695 1.49164 1.26146 0.96535 1.02682 0.95944 0.84940 0.77766 0.76284 0.79076 1.19473 1.19433 1.19601 1.19707 0.92998 0.83955 1.49722 0.89796 1.41910 1.09433 1.04928 1.63028 1.18948 0.87775 0.85179 0.83945 1.90466 1.14973 1.87569 1.58010 1.22766 1.00903 0.91459 1.05849 1.23478 0.94486 0.98145 0.94014 1.22564 0.93394 0.89968 0.91582 0.89851 1.22704 0.96834 1.00155 0.97371 1.22942 0.98422 1.00892 0.96155 1.23563 0.81322 1.02763 0.96033 1.89022 1.24284 1.51487 1.67038 0.91034 0.76938 0.83165 0.82727 0.90510 0.92144 0.88737 0.89902 0.86618 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 13.05 21.68 0.28 -49.16 15 2 C -0.01 -0.66 5.50 84.97 0.47 -0.19 15 3 Si 1.00 42.53 29.55 68.60 2.03 44.56 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 15 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 7 C -0.33 -18.97 9.68 84.12 0.81 -18.15 15 8 H 0.08 5.01 7.15 -2.91 -0.02 4.99 15 9 N -0.56 -29.27 5.27 -310.43 -1.64 -30.91 15 10 C 0.45 21.99 7.56 86.53 0.65 22.65 15 11 O -0.62 -33.31 11.85 -4.25 -0.05 -33.36 15 12 C -0.19 -7.05 10.02 23.40 0.23 -6.81 15 13 C -0.08 -2.71 9.18 24.54 0.23 -2.48 15 14 C 0.08 2.99 2.69 30.35 0.08 3.07 15 15 H 0.08 3.81 5.34 -2.46 -0.01 3.79 15 16 C -0.13 -4.25 6.38 31.61 0.20 -4.05 15 17 C -0.15 -3.56 7.09 31.61 0.22 -3.34 15 18 C 0.04 1.02 7.63 72.49 0.55 1.57 15 19 O -0.40 -13.40 11.33 -148.98 -1.69 -15.09 15 20 H 0.28 14.12 8.31 -92.70 -0.77 13.35 15 21 H 0.40 19.84 7.88 -92.71 -0.73 19.11 15 22 H 0.15 4.59 8.06 -2.91 -0.02 4.57 15 23 H 0.16 4.04 8.06 -2.91 -0.02 4.02 15 24 H 0.08 2.21 7.87 -2.39 -0.02 2.19 15 25 H 0.06 2.25 7.44 -2.39 -0.02 2.23 15 26 H 0.09 1.82 8.14 -2.38 -0.02 1.80 15 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 15 28 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 29 H 0.05 1.37 8.14 -2.38 -0.02 1.35 15 Total: -1.00 -64.53 250.76 2.82 -61.72 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.43 Total: 29.97 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 3.46 Total: -7.74 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.35 Total: -80.07 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -1.74 Total: -48.45 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -64.53 2.82 -61.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819205742.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.556 kcal (2) G-P(sol) polarization free energy of solvation -64.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds