Wall clock time and date at job start Mon Mar 30 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53839 * 113.65915 * 254.00086 * 15 14 12 17 17 C 1.51772 * 86.68954 * 220.75897 * 16 15 14 18 18 O 1.20763 * 135.75204 * 205.15776 * 17 16 15 19 19 C 1.51582 * 88.46738 * 25.08088 * 17 16 15 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 25 25 H 1.09005 * 112.88442 * 25.33592 * 15 14 12 26 26 H 1.09000 * 113.66915 * 335.19845 * 16 15 14 27 27 H 1.08999 * 113.66459 * 106.26392 * 16 15 14 28 28 H 1.08999 * 113.66399 * 220.45683 * 19 17 16 29 29 H 1.09000 * 113.66953 * 89.38888 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.1110 -1.7544 4.3789 17 6 1.7187 -1.2415 5.6715 18 8 1.7637 -1.6217 6.8169 19 6 2.2463 -0.0469 4.9019 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7088 1.1611 -3.4845 24 1 1.1487 0.5387 2.5436 25 1 3.1145 -1.4978 3.4730 26 1 0.0981 -1.3943 4.1984 27 1 1.2091 -2.8317 4.2453 28 1 3.2561 0.2469 5.1884 29 1 1.5526 0.7932 4.8685 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908467126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:19 Heat of formation + Delta-G solvation = -56.146222 kcal Electronic energy + Delta-G solvation = -13689.928532 eV Core-core repulsion = 11192.940646 eV Total energy + Delta-G solvation = -2496.987887 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.23269 -38.60967 -36.39297 -33.77204 -32.41026 -30.23328 -26.25092 -25.17034 -23.89327 -21.77796 -19.74165 -18.96213 -16.72348 -16.22936 -15.92025 -15.64626 -15.34014 -14.54724 -14.01684 -13.87904 -13.07979 -12.82980 -12.63441 -12.43579 -11.78902 -11.42385 -11.29700 -11.02200 -10.75934 -10.71315 -10.29651 -9.98824 -9.55887 -9.02267 -8.68398 -8.58688 -8.35910 -6.05951 -4.09290 1.71721 3.34761 3.37396 3.42437 3.57610 3.61149 3.96941 4.40792 4.45634 4.71899 4.97875 5.15499 5.27622 5.35401 5.52237 5.75243 5.86030 6.25705 6.57054 6.77914 6.86943 6.95866 7.32232 7.43344 7.72211 7.94528 8.09555 8.38018 8.99403 9.14862 9.56490 11.01613 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.073971 B = 0.006465 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.435786 B = 4329.645886 C = 4506.164612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.054 0.946 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.543 6.543 14 N -0.733 5.733 15 C 0.137 3.863 16 C -0.208 4.208 17 C 0.364 3.636 18 O -0.431 6.431 19 C -0.201 4.201 20 H 0.012 0.988 21 H 0.093 0.907 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.399 0.601 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 0.996 10.858 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.071 0.929 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.418 6.418 14 N -0.386 5.386 15 C 0.030 3.970 16 C -0.248 4.248 17 C 0.237 3.763 18 O -0.302 6.302 19 C -0.240 4.240 20 H 0.031 0.969 21 H 0.112 0.888 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.234 0.766 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.742 0.176 11.208 11.234 hybrid contribution -0.026 0.022 -0.866 0.867 sum -0.768 0.197 10.342 10.373 Atomic orbital electron populations 1.21748 0.96473 0.99852 1.00976 1.18884 0.94189 0.96887 0.89238 0.92868 1.21107 1.31121 1.12886 0.89015 0.90819 1.24949 0.95075 0.95055 0.99127 1.69857 1.37016 1.23076 1.23692 0.86503 0.79297 0.79721 0.81605 1.21375 1.20177 1.20192 1.22072 0.78137 0.84186 0.84471 1.90536 1.37814 1.26798 1.86676 1.46170 1.55113 1.32371 1.04993 1.21795 0.97741 0.93558 0.83864 1.24621 1.02112 1.03625 0.94414 1.25499 0.75808 0.87656 0.87288 1.90412 1.52034 1.68151 1.19626 1.24409 1.04340 0.99534 0.95714 0.96898 0.88816 0.94967 0.92876 0.76648 0.86345 0.86143 0.88574 0.88372 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.87 37.16 0.33 -2.56 15 2 C 0.03 0.69 2.64 -92.93 -0.25 0.45 15 3 H 0.05 1.31 8.14 -51.92 -0.42 0.88 15 4 C -0.50 -13.94 8.37 -34.44 -0.29 -14.23 15 5 H 0.07 2.16 6.75 -52.49 -0.35 1.80 15 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 15 7 N -0.90 -24.69 11.32 55.43 0.63 -24.07 15 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 15 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 12 C 0.52 11.14 7.15 -10.99 -0.08 11.06 15 13 O -0.54 -13.49 15.08 5.56 0.08 -13.41 15 14 N -0.73 -11.25 5.26 -53.04 -0.28 -11.53 15 15 C 0.14 1.77 4.23 -67.14 -0.28 1.49 15 16 C -0.21 -2.37 7.86 -26.92 -0.21 -2.58 15 17 C 0.36 4.21 9.14 -28.16 -0.26 3.95 15 18 O -0.43 -6.32 17.99 6.00 0.11 -6.21 15 19 C -0.20 -1.94 7.80 -27.01 -0.21 -2.15 15 20 H 0.01 0.22 7.56 -51.93 -0.39 -0.18 15 21 H 0.09 2.29 6.07 -51.93 -0.32 1.97 15 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 24 H 0.40 5.07 8.13 -40.82 -0.33 4.74 15 25 H 0.12 1.72 7.50 -51.93 -0.39 1.33 15 26 H 0.12 1.22 8.14 -51.93 -0.42 0.79 15 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 28 H 0.10 0.87 8.14 -51.93 -0.42 0.44 15 29 H 0.12 0.92 8.11 -51.93 -0.42 0.50 15 LS Contribution 255.03 15.07 3.84 3.84 Total: -1.00 -31.39 255.03 -5.43 -36.82 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.45 Total: 1.13 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -1.34 Total: -3.07 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.35 Total: -35.60 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.19 Total: -19.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.39 -5.43 -36.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908467126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.324 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds