Wall clock time and date at job start Mon Mar 30 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53839 * 113.65915 * 254.00086 * 15 14 12 17 17 C 1.51772 * 86.68954 * 220.75897 * 16 15 14 18 18 O 1.20763 * 135.75204 * 205.15776 * 17 16 15 19 19 C 1.51582 * 88.46738 * 25.08088 * 17 16 15 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 25 25 H 1.09005 * 112.88442 * 25.33592 * 15 14 12 26 26 H 1.09000 * 113.66915 * 335.19845 * 16 15 14 27 27 H 1.08999 * 113.66459 * 106.26392 * 16 15 14 28 28 H 1.08999 * 113.66399 * 220.45683 * 19 17 16 29 29 H 1.09000 * 113.66953 * 89.38888 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.1110 -1.7544 4.3789 17 6 1.7187 -1.2415 5.6715 18 8 1.7637 -1.6217 6.8169 19 6 2.2463 -0.0469 4.9019 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7088 1.1611 -3.4845 24 1 1.1487 0.5387 2.5436 25 1 3.1145 -1.4978 3.4730 26 1 0.0981 -1.3943 4.1984 27 1 1.2091 -2.8317 4.2453 28 1 3.2561 0.2469 5.1884 29 1 1.5526 0.7932 4.8685 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908467126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:19 Heat of formation + Delta-G solvation = -78.252486 kcal Electronic energy + Delta-G solvation = -13690.887132 eV Core-core repulsion = 11192.940646 eV Total energy + Delta-G solvation = -2497.946486 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.35098 -40.08729 -37.58257 -35.73010 -33.91471 -32.07702 -27.18134 -27.09942 -25.36863 -23.25327 -21.22982 -20.04421 -18.38321 -17.76288 -17.45904 -16.78077 -16.46624 -16.30922 -15.61699 -15.29605 -14.59106 -14.33450 -13.85211 -13.59885 -13.41972 -12.94601 -12.77234 -12.60799 -12.53252 -12.26782 -12.14937 -11.98069 -11.00969 -10.58319 -10.49539 -10.28177 -9.93141 -8.13171 -6.22890 0.79760 1.43025 1.43683 1.52289 1.93217 2.34333 2.51910 2.91664 3.16769 3.45654 3.77905 4.01163 4.19112 4.43213 4.57491 4.73266 4.81009 4.89221 4.98808 5.02136 5.10339 5.54837 5.62677 5.78962 5.98896 6.26044 6.40899 6.77902 6.90064 7.42768 7.58169 8.92139 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.073971 B = 0.006465 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.435786 B = 4329.645886 C = 4506.164612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.022 3.978 3 H 0.045 0.955 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.587 6.587 14 N -0.708 5.708 15 C 0.123 3.877 16 C -0.203 4.203 17 C 0.372 3.628 18 O -0.464 6.464 19 C -0.175 4.175 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.022 0.978 23 H 0.264 0.736 24 H 0.416 0.584 25 H 0.099 0.901 26 H 0.141 0.859 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 1.901 11.721 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.001 3.999 3 H 0.063 0.937 4 C -0.569 4.569 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.313 3.687 13 O -0.466 6.466 14 N -0.361 5.361 15 C 0.017 3.983 16 C -0.242 4.242 17 C 0.248 3.752 18 O -0.338 6.338 19 C -0.213 4.213 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.254 0.746 25 H 0.117 0.883 26 H 0.159 0.841 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.387 1.123 12.104 12.235 hybrid contribution 0.159 -0.245 -1.101 1.139 sum -1.227 0.878 11.003 11.106 Atomic orbital electron populations 1.21563 0.94877 0.99452 1.01935 1.18826 0.95467 0.96075 0.89522 0.93722 1.21299 1.31547 1.12746 0.91285 0.93386 1.25553 0.95248 0.95743 1.01312 1.69933 1.37189 1.23547 1.24303 0.85712 0.78673 0.78758 0.79096 1.20075 1.20246 1.20282 1.21542 0.77883 0.83528 0.85700 1.90519 1.39902 1.28671 1.87503 1.45772 1.54045 1.32352 1.03934 1.21915 0.97623 0.95020 0.83747 1.24647 1.02613 1.03149 0.93834 1.25577 0.74991 0.88074 0.86604 1.90416 1.53390 1.69050 1.20905 1.24326 1.05973 0.99106 0.91926 0.92350 0.91352 0.95910 0.92645 0.74633 0.88336 0.84125 0.89302 0.86917 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 8.87 71.98 0.64 -4.46 15 2 C 0.02 1.06 2.64 -12.29 -0.03 1.02 15 3 H 0.05 2.18 8.14 -2.38 -0.02 2.16 15 4 C -0.53 -29.89 8.37 25.60 0.21 -29.67 15 5 H 0.05 2.90 6.75 -2.91 -0.02 2.88 15 6 C 0.02 1.13 5.30 84.66 0.45 1.58 15 7 N -0.91 -49.94 11.32 21.45 0.24 -49.70 15 8 Si 0.95 44.21 29.54 68.60 2.03 46.23 15 9 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 15 12 C 0.52 22.11 7.15 87.66 0.63 22.73 15 13 O -0.59 -29.60 15.08 -3.03 -0.05 -29.65 15 14 N -0.71 -20.08 5.26 -440.11 -2.31 -22.39 15 15 C 0.12 2.90 4.23 45.50 0.19 3.09 15 16 C -0.20 -4.14 7.86 30.47 0.24 -3.91 15 17 C 0.37 7.67 9.14 29.67 0.27 7.95 15 18 O -0.46 -12.85 17.99 -1.46 -0.03 -12.88 15 19 C -0.18 -2.72 7.80 30.41 0.24 -2.48 15 20 H 0.06 1.89 7.56 -2.39 -0.02 1.87 15 21 H 0.07 3.28 6.07 -2.39 -0.01 3.27 15 22 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 23 H 0.26 13.81 8.31 -92.71 -0.77 13.04 15 24 H 0.42 9.00 8.13 -92.70 -0.75 8.25 15 25 H 0.10 2.80 7.50 -2.38 -0.02 2.78 15 26 H 0.14 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 15 29 H 0.15 1.49 8.11 -2.39 -0.02 1.48 15 Total: -1.00 -68.87 255.03 3.13 -65.74 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.41 Total: 6.79 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 2.84 Total: -4.14 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -2.07 Total: -72.09 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.07 Total: -42.53 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.87 3.13 -65.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908467126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.512 kcal (2) G-P(sol) polarization free energy of solvation -68.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds