Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47224 * 2 1 4 4 N 1.46899 * 109.47228 * 239.99547 * 2 1 3 5 5 C 1.50699 * 109.46990 * 119.99920 * 2 1 3 6 6 N 1.30822 * 125.89711 * 75.15021 * 5 2 1 7 7 N 1.40053 * 108.36244 * 180.28036 * 6 5 2 8 8 C 1.46498 * 126.00198 * 179.70970 * 7 6 5 9 9 C 1.35200 * 108.00318 * 359.73478 * 7 6 5 10 10 C 1.35835 * 107.64582 * 0.02562 * 9 7 6 11 11 O 1.36010 * 126.11132 * 179.97438 * 10 9 7 12 12 C 1.34797 * 116.99811 * 0.02562 * 11 10 9 13 13 H 1.08002 * 119.99847 * 359.97438 * 12 11 10 14 14 C 1.38628 * 119.99643 * 179.97438 * 12 11 10 15 15 N 1.31588 * 119.99638 * 179.72144 * 14 12 11 16 16 Si 1.86800 * 120.00434 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72329 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72177 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72213 * 16 14 12 20 20 H 1.09005 * 109.47325 * 300.00182 * 1 2 3 21 21 H 1.08998 * 109.46939 * 60.00071 * 1 2 3 22 22 H 1.09000 * 109.47719 * 179.97438 * 1 2 3 23 23 H 1.00901 * 111.00111 * 300.00452 * 4 2 1 24 24 H 1.00906 * 110.99598 * 63.95588 * 4 2 1 25 25 H 1.09002 * 109.46728 * 270.03742 * 8 7 6 26 26 H 1.09001 * 109.46965 * 30.02855 * 8 7 6 27 27 H 1.08992 * 109.47603 * 150.03272 * 8 7 6 28 28 H 1.08000 * 126.17433 * 179.97438 * 9 7 6 29 29 H 0.96999 * 119.99969 * 180.27438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0323 -0.7104 1.2305 6 7 2.0319 -2.0044 1.4230 7 7 2.5730 -2.2623 2.6888 8 6 2.7479 -3.5832 3.2977 9 6 2.9052 -1.0781 3.2504 10 6 2.5834 -0.0984 2.3663 11 8 2.7591 1.2376 2.5512 12 6 3.3042 1.6269 3.7209 13 1 3.5792 0.8895 4.4605 14 6 3.5117 2.9739 3.9745 15 7 4.0388 3.3544 5.1186 16 14 3.0367 4.2494 2.6950 17 1 4.1909 4.5016 1.7954 18 1 1.8885 3.7473 1.8982 19 1 2.6530 5.5129 3.3742 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6961 -1.6480 -1.2227 24 1 1.7502 -0.1990 -2.0372 25 1 1.8530 -3.8440 3.8628 26 1 2.9128 -4.3246 2.5160 27 1 3.6077 -3.5637 3.9673 28 1 3.3461 -0.9367 4.2261 29 1 4.1803 4.2971 5.2977 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067822.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = 26.574786 kcal Electronic energy + Delta-G solvation = -14001.983586 eV Core-core repulsion = 11540.875502 eV Total energy + Delta-G solvation = -2461.108083 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.17636 -38.87022 -37.10733 -34.32818 -33.28519 -30.26454 -29.68637 -27.94787 -26.41400 -23.85358 -22.10393 -20.72182 -19.21781 -18.87992 -17.09624 -16.62503 -16.51108 -15.80649 -15.52171 -14.98889 -14.89466 -14.49453 -14.27279 -14.18443 -13.57782 -13.45681 -13.11699 -12.80144 -12.59038 -12.23065 -12.06535 -11.71283 -11.56842 -10.81951 -10.17773 -9.60854 -8.79940 -8.38814 -6.06597 0.88760 1.36023 1.39339 1.55882 1.69204 1.89101 2.37040 3.02810 3.24885 3.64116 3.69354 4.00470 4.18295 4.26440 4.34575 4.47822 4.68079 4.68951 4.74606 4.97116 5.10252 5.18320 5.49297 5.64517 6.07736 6.21523 6.22293 6.69428 6.73899 6.98069 7.78242 8.74441 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.027611 B = 0.011622 C = 0.008611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.837620 B = 2408.735769 C = 3250.732559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.080 0.920 4 N -0.840 5.840 5 C 0.054 3.946 6 N -0.277 5.277 7 N -0.371 5.371 8 C 0.103 3.897 9 C -0.056 4.056 10 C -0.026 4.026 11 O -0.240 6.240 12 C -0.378 4.378 13 H 0.070 0.930 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.270 1.270 18 H -0.260 1.260 19 H -0.272 1.272 20 H 0.047 0.953 21 H 0.086 0.914 22 H 0.062 0.938 23 H 0.349 0.651 24 H 0.357 0.643 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.171 0.829 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 -9.741 -8.425 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.061 3.939 3 H 0.098 0.902 4 N -0.372 5.372 5 C -0.113 4.113 6 N -0.103 5.103 7 N -0.161 5.161 8 C -0.036 4.036 9 C -0.199 4.199 10 C -0.082 4.082 11 O -0.147 6.147 12 C -0.456 4.456 13 H 0.088 0.912 14 C -0.193 4.193 15 N -0.578 5.578 16 Si 0.789 3.211 17 H -0.195 1.195 18 H -0.184 1.184 19 H -0.197 1.197 20 H 0.066 0.934 21 H 0.105 0.895 22 H 0.081 0.919 23 H 0.163 0.837 24 H 0.172 0.828 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.188 0.812 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.395 -10.513 -8.562 14.592 hybrid contribution -0.515 1.221 0.587 1.449 sum -5.910 -9.292 -7.975 13.597 Atomic orbital electron populations 1.22474 0.94728 1.02610 1.02948 1.19579 0.93322 0.95907 0.85058 0.90152 1.58686 1.67867 1.07073 1.03563 1.21880 1.02923 0.90388 0.96084 1.76825 1.20469 1.14384 0.98644 1.47994 1.49415 1.06554 1.12138 1.22110 1.03957 0.78548 0.99015 1.22137 1.10518 0.85828 1.01425 1.19312 1.07384 0.84993 0.96489 1.83469 1.76747 1.17030 1.37489 1.20508 1.39180 0.93780 0.92084 0.91246 1.25138 0.96629 0.98666 0.98884 1.69750 1.45710 1.18002 1.24319 0.85254 0.79636 0.77507 0.78657 1.19488 1.18367 1.19654 0.93366 0.89518 0.91883 0.83741 0.82842 0.89647 0.88097 0.88092 0.81192 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 9.46 71.98 0.68 -3.97 15 2 C 0.17 5.96 3.84 44.17 0.17 6.13 15 3 H 0.08 3.04 8.07 -2.39 -0.02 3.02 15 4 N -0.84 -23.43 9.22 -171.82 -1.58 -25.01 15 5 C 0.05 2.23 6.06 43.21 0.26 2.49 15 6 N -0.28 -10.56 12.41 -47.13 -0.58 -11.15 15 7 N -0.37 -13.36 4.02 -368.93 -1.48 -14.85 15 8 C 0.10 2.34 11.47 127.77 1.47 3.80 15 9 C -0.06 -2.41 10.55 83.62 0.88 -1.53 15 10 C -0.03 -1.25 6.91 22.21 0.15 -1.10 15 11 O -0.24 -13.30 8.60 -25.32 -0.22 -13.52 15 12 C -0.38 -22.53 10.08 67.91 0.68 -21.84 15 13 H 0.07 4.27 6.17 -2.91 -0.02 4.26 15 14 C 0.00 0.18 5.49 84.82 0.47 0.65 15 15 N -0.93 -56.76 13.96 21.61 0.30 -56.46 15 16 Si 0.97 46.43 28.62 68.60 1.96 48.39 15 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 18 H -0.26 -12.29 7.11 99.48 0.71 -11.59 15 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 20 H 0.05 1.50 8.14 -2.38 -0.02 1.48 15 21 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.35 9.01 8.86 -89.69 -0.79 8.21 15 24 H 0.36 7.60 9.07 -89.69 -0.81 6.79 15 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 28 H 0.17 7.29 6.71 -2.91 -0.02 7.27 15 29 H 0.28 15.72 8.31 -92.71 -0.77 14.95 15 Total: -1.00 -70.86 258.05 2.73 -68.13 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.43 Total: 19.85 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.76 Total: -15.38 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -3.35 Total: -107.47 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.22 Total: -13.52 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.96 Total: 48.39 kcal Total: -70.86 2.73 -68.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067822.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.705 kcal (2) G-P(sol) polarization free energy of solvation -70.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds